Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1803 ATGGGTACTACGAATCCACAGCCACTGCAAGTTCGGCCTTTCGAGGACGGAGAACTACAACTGGTGCAGGTTCCCATGCAGGTGGACGGTGTCGAAGATGGATTGAATGCTCTATGTGTCAATGGACGTCGTGACGAGGTGAATGATGGGGTAGAAGAAGCTCGAGTGAGTTCTGGGTTTTCAGGGACAAATGGGTGTGCTTTCAAGTCTCGAACCAGTGAACTCACCATTTCGTTTGAAGGCGAGGTCTATGTTTTCCCAGCGGTTACGCCAGAAAAGGTACAGGCTGTGTTGCTATTGTTGGGAGGGTGTGAGATGCCCAGCCCCTGTAGTGCCCCCAGCACTGAGCTCTTGCTGCAACAGAACTATCAGAACATGAGGGGAATTAATGATACTTCCCGGGGTTCAAAGCTTTCACGGAGATTTGCATCCCTTGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAAAAAATTCGGTACAGCTGCCGTAAAGAAGTTGCACAGAGGATGCATCGTAAGAATGGACAGTTTGCATCATCAAAGGAATGCGACAGTTCTGCTGCTGAAAACTGGGACTCTAGCAATGGTGCTGCTTGTCCAGAATCTAATGAACGTAAATGTCAGCATTGCGGAATTAGTGAAAAGTCTACTCCAGCAATGCGGCGAGGACCAGCTGGTCCAAGATCTCTATGCAATGCTTGTGGGCTAATGTGGGCAAATAAGGGGACTCTGAGAGATCTCAGCAAAACAGGAAAGGTCACCTCTTTGGAACAAAATGAACTGGATACTTCAGCTGAGAGGAAGCCTTCCACGACTAAACCAGAAAATTCTTGTCCTGGGCAGAATGAGGAAGGAAGCCCCAAGGAGACAAAGCCCGAGCTGTTGGAATCTGGACAGTTACCCAAGAGCGTTAAGGAGCAGTATACGCTTGAAACTACTGAAGCAGTTACTGACGATTTATCCATCCAAGTGGAGAACCTTGATGTTAATATGCATGAGCAGGATACTCTTGAAGATCTTGCTGATGCTTCTGGAACAGATTTTGAGATTCCTACGGGTTTTGATGAGCAGATTGACATTGATGATTCCAACTTGAAGACCTACTGGTTAATAGGGTTTAGAAAGAGCATCAGGATTGACATTGATGATTCCAACTTGAAGACCTACTGGTTATGA 1185 0.4633 MGTTNPQPLQVRPFEDGELQLVQVPMQVDGVEDGLNALCVNGRRDEVNDGVEEARVSSGFSGTNGCAFKSRTSELTISFEGEVYVFPAVTPEKVQAVLLLLGGCEMPSPCSAPSTELLLQQNYQNMRGINDTSRGSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASSKECDSSAAENWDSSNGAACPESNERKCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLSKTGKVTSLEQNELDTSAERKPSTTKPENSCPGQNEEGSPKETKPELLESGQLPKSVKEQYTLETTEAVTDDLSIQVENLDVNMHEQDTLEDLADASGTDFEIPTGFDEQIDIDDSNLKTYWLIGFRKSIRIDIDDSNLKTYWL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1803 394 Pfam CCT motif 141 183 IPR010402 GO:0005515
Alju04g1803 394 MobiDBLite consensus disorder prediction 252 304 - -
Alju04g1803 394 PANTHER GATA TRANSCRIPTION FACTOR 28 41 352 IPR045280 GO:0006355
Alju04g1803 394 Pfam tify domain 71 102 IPR010399 -
Alju04g1803 394 ProSiteProfiles Tify domain profile. 68 103 IPR010399 -
Alju04g1803 394 ProSiteProfiles CCT domain profile. 141 183 IPR010402 GO:0005515
Alju04g1803 394 ProSitePatterns GATA-type zinc finger domain. 210 237 IPR000679 GO:0006355|GO:0043565
Alju04g1803 394 MobiDBLite consensus disorder prediction 273 287 - -
Alju04g1803 394 ProSiteProfiles GATA-type zinc finger domain profile. 204 260 IPR000679 GO:0006355|GO:0043565
Alju04g1803 394 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 257 - -
Alju04g1803 394 Pfam GATA zinc finger 210 246 IPR000679 GO:0006355|GO:0043565
Alju04g1803 394 CDD ZnF_GATA 209 252 IPR000679 GO:0006355|GO:0043565
Alju04g1803 394 Gene3D - 204 255 IPR013088 GO:0006355|GO:0008270
Alju04g1803 394 SMART tify_2 68 103 IPR010399 -
Alju04g1803 394 SMART GATA_3 204 257 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1803 Alju-ChrAlju04 46349045 46355817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1803 74 263 Tify Gene Family AT1G51600 55.172 8.76e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju04g1803 CCT 6.3e-14 CL0281