Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1722 ATGGGGAGAGGGAAGATTGTGATTAAGAGGATTGAGGATTCAACAAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAATGGATTACTAAAGAAAGCAAGGGAGCTTTCGATCCTCTGCGACGCGCAAGTTGGCGTTATCGTGTTCTCCAGCACTGGCAAGCTCTATGAATATGGAAGCTCCAGCATGAGATCCATTATTGAGCGCTACAACAAACTAAAAGTGGAACACCATAATCGGCATATGAATCATGAGTCGGAAGTCAAGTTTTGGCAGAGAGAAGTGATAGTATTGAGGCAACAACTGCAACATTTGCAGGAATGTCACAGGCAACTGATGGGTGCACAACTTTCTGGTTTGGGCATTAACGAACTGCAAAATTTGGAAAATCAACTGGAGATGAGTTTAAAGGGCGTCAGAATAAAAAAGAATCAAATTTTAACTGATGAGATTGAAGAGCTGCAACAAAAGGGAAACCAAATCCATGGAGAAAATGTACAACTCTATAAAAGGATAAACCTCATTACTAAAGAAAATATAGAACTACAGAAGATTCATGAAGCAAGGATTATGAATGAAGAAATTGGGGATTCCGATCCTCCATATAATATCAGCAACAAATATGGTTTACAAGCTCCAAACCATTCGCAGCTGAACCAGCCACAACCTCATCAATATACTGAATCACCAGCAAATGCTATGGAACTGAGGTATATGGCTTCAAACTGA 726 0.4008 MGRGKIVIKRIEDSTSRQVTFSKRRNGLLKKARELSILCDAQVGVIVFSSTGKLYEYGSSSMRSIIERYNKLKVEHHNRHMNHESEVKFWQREVIVLRQQLQHLQECHRQLMGAQLSGLGINELQNLENQLEMSLKGVRIKKNQILTDEIEELQQKGNQIHGENVQLYKRINLITKENIELQKIHEARIMNEEIGDSDPPYNISNKYGLQAPNHSQLNQPQPHQYTESPANAMELRYMASN 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1722 241 Coils Coil 121 141 - -
Alju04g1722 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju04g1722 241 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Alju04g1722 241 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Alju04g1722 241 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Alju04g1722 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 221 - -
Alju04g1722 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju04g1722 241 Coils Coil 143 163 - -
Alju04g1722 241 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g1722 241 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Alju04g1722 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Alju04g1722 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju04g1722 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju04g1722 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju04g1722 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju04g1722 241 Pfam K-box region 82 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1722 Alju-ChrAlju04 42857871 42864053 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1722 1 222 MADS-box Gene Family AT2G14210 61.883 6.80e-81 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju04g1722 K-box 4.4e-25 No_clan