Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1720 ATGGGGAGAGGAAAGATTGCGATTAAGAGGATTGACAATTCAACCAACAGGCAAATCACTTTCTCAACGAGACGAACAGGTTTGCTCAAGAAAGCGAGAGAGCTCGCGATCCTCTGTGACGCACAAGTTGGGGTTATTGTGTTCTCTAGCACTGGCAAGCTCTATGAATATGGAAGCTCCAGCATGAAGTCAATTATAGAGCGCTACAATAAACAAAAAGAGGAACACCATCAGCTTATGAATCCAGCTGCAGAAGCCAAGTTTTGGCAGAGAGAAGCAACGGTCTTGAGGCATCAACTTGAACACTTGCAGGAATTCCACAGGCAATTCATGGGTGAACACCTTTCTGGTTTGGGAATTAACGAATTGAAAAGTTTGGAAAATCAACTGGAGATGAGTTTAAAAAATGTCCAGATCAAGAAGGATCAAATTTTAAGTGATGAGATTAAAGAGTTAGAACACAAGGGACATCAAATTCATCAAGAAAATGTACATCTCCACAAGACGATAGAAGTCATTAGGAAAGAAAATGCAGAACTACAGGCGAAGATCTGTGAAGGAAGGGTTGTGAATGAGGAAAATGGGGATTCAAATCCTACATACACTATCAGCAATAAATATGGGTCACAGGCACGTATGCAACTCCAGCCGAGCCAGCCACAGTCTCAATCTAGTGATGAATCACCAGCCAAAGCATTGGAGCTGAGGTTCACACATGCATTGTTGGATATGTCTCTGTACATTTTAGACAATGCGGCTATAAAATGTGCCAAAGTGTTGAATTATTTAGTTTCTAGATATGTTGGTGACAAGACGAATGGAATAATATCTGTTTACCTTTTTATGAAATAG 852 0.4061 MGRGKIAIKRIDNSTNRQITFSTRRTGLLKKARELAILCDAQVGVIVFSSTGKLYEYGSSSMKSIIERYNKQKEEHHQLMNPAAEAKFWQREATVLRHQLEHLQEFHRQFMGEHLSGLGINELKSLENQLEMSLKNVQIKKDQILSDEIKELEHKGHQIHQENVHLHKTIEVIRKENAELQAKICEGRVVNEENGDSNPTYTISNKYGSQARMQLQPSQPQSQSSDESPAKALELRFTHALLDMSLYILDNAAIKCAKVLNYLVSRYVGDKTNGIISVYLFMK 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1720 283 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju04g1720 283 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju04g1720 283 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju04g1720 283 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Alju04g1720 283 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 213 - -
Alju04g1720 283 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju04g1720 283 Coils Coil 120 143 - -
Alju04g1720 283 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju04g1720 283 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g1720 283 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Alju04g1720 283 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Alju04g1720 283 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Alju04g1720 283 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g1720 283 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1720 Alju-ChrAlju04 42784248 42788755 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1720 1 228 MADS-box Gene Family AT2G14210 56.957 5.52e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju04g1720 K-box 7.8e-24 No_clan