Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1718 ATGGGGAGAGAGAAGATTGCGATTAAGAGGATTGACAATTCAGCCAACAGGCAAATCACTTTCTCAAAGAGACGAACTGGTTTACTCAAGAAAGCAAGAGAGCTTGCGATCCTCTGTGACGCACAAGTTGGGGTCACTGTGTTCTCTAGCACTGGCAAGCTCTATGAATATGGAAGCTGCAGCATGAAGTCAATTATTGAACGCTACCAAAATCAAAAAGAGGAACACCATCAGCTTATGAATCCAGCCGCAGAAGCCAAGAGAGAAGCAACGGTCTTGAGGCAACAACTTGAATACTTGCAGGAATTGCACAGGCAATTCATGGGTGAACAACTTTCTGGTTTGGGAATTAACGAATTGAAAAGTTTGGAAAATCAACTGGAGATGAGTTTAAAAAATGTCCAGATCAAGAAAGATCAAATTTTAAGTGATGAGATTAAAGAGTTAGAACACAAGGGACAGCAAATTTATCAAGAAAATGTACAGCTCCACAAAACGATGGAAGTCATTAGGAAAGAAAATGCAGAAATACAGGCGAAGATTTGTGAAGGAACGGTTGTGAATGAGGAAAATGGGGATTCAGATCCTACATACACTATCAGCAACAAATATGGGTCACATGTACGTATGCATCTCCAGCCGAGCCAGCCACAGTCTCAATCCAGTGATGAATCACCAGCCAAAGCATTGGAGCTGACGTATAAATCCCTTCAGGCTGATGAAATAAATATACATCTTGAACACACACACACACCAACACTAACACAAAAATATATATTCCTCCTGACCTTAATATAA 798 0.406 MGREKIAIKRIDNSANRQITFSKRRTGLLKKARELAILCDAQVGVTVFSSTGKLYEYGSCSMKSIIERYQNQKEEHHQLMNPAAEAKREATVLRQQLEYLQELHRQFMGEQLSGLGINELKSLENQLEMSLKNVQIKKDQILSDEIKELEHKGQQIYQENVQLHKTMEVIRKENAEIQAKICEGTVVNEENGDSDPTYTISNKYGSHVRMHLQPSQPQSQSSDESPAKALELTYKSLQADEINIHLEHTHTPTLTQKYIFLLTLI 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1718 265 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 211 - -
Alju04g1718 265 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju04g1718 265 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju04g1718 265 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Alju04g1718 265 Coils Coil 117 140 - -
Alju04g1718 265 Pfam K-box region 84 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g1718 265 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g1718 265 Coils Coil 83 103 - -
Alju04g1718 265 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju04g1718 265 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju04g1718 265 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju04g1718 265 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju04g1718 265 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Alju04g1718 265 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Alju04g1718 265 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1718 Alju-ChrAlju04 42598067 42606095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1718 1 226 MADS-box Gene Family AT4G37940 49.345 1.75e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju04g1718 K-box 3.3e-21 No_clan