Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1709 ATGGCGACGTCCCAGAATCGCTGCGTTTTTGTTGGGAATATACCGTATGATACTACAGAGAAACAGCTTATAGAAATCTGCGAGGAGGTTGGGCCTGTAGTATCATTCAGATTAGTGAAGGATAGAGATACTGGAAAACCAAAAGGTTATGGCTTCTGCGAGTATAACGATGAAGAGACAGCTCTAAGAGGCCATTTAAATCTTCAGGGTTACGAGATTAATGGACGGAAGTTGCGTGTCAATTTCGCCGACAGAAATAGAGAACAGACTCCTCAGAAACAAGAAGAAGCTGCCAACCATCAACCTATTGGTCTTTATATTGCTATAAGAGCTGCAACGGTAATGGAATCAGCCCTAGGAGGGCATCAAAATGGCTTAACACATGACCCTTTAACTCTGAATCTGGCAAAACTATCCCGGAATCAGCTGACGGAGATTGTCTCTGAGCTTAAGGCAATGGCTACACAAAACCCGCAAGCAGCTCGTCACTTGTTACTTTCTAGACCACAGTTGGCTAAGGCTCTTTTTCAGGCAGAGATGATGCTAGGAATGGTGACTCCACAAATGTTACAAATGTCAAACATTGGATCATCAGGAGAGAAAAAAAGAAATGAGCCTTCTTCATCAGATTCAGAACCATTTAGCCGTCCTTCTAAGAAGATCAAATTGGACGATGCAAACAAATATTGCTCTTTCTCTACAGGGGGAGTCACAAGTGAGCAACATTTCTCTCATCTTCCGTCTGACGTGCAATCGCTTTTACTGCAACAAGTGCGGAGTCTGACGCCTGAGCTATTGAGTTCTCTGCCACCGGAGCAGCAACAACAGGTTTTGCTGCTTCAGCAAGCTCTCCGGGCTCAGACCTCATAG 870 0.446 MATSQNRCVFVGNIPYDTTEKQLIEICEEVGPVVSFRLVKDRDTGKPKGYGFCEYNDEETALRGHLNLQGYEINGRKLRVNFADRNREQTPQKQEEAANHQPIGLYIAIRAATVMESALGGHQNGLTHDPLTLNLAKLSRNQLTEIVSELKAMATQNPQAARHLLLSRPQLAKALFQAEMMLGMVTPQMLQMSNIGSSGEKKRNEPSSSDSEPFSRPSKKIKLDDANKYCSFSTGGVTSEQHFSHLPSDVQSLLLQQVRSLTPELLSSLPPEQQQQVLLLQQALRAQTS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1709 289 Gene3D - 2 102 IPR012677 -
Alju04g1709 289 MobiDBLite consensus disorder prediction 203 220 - -
Alju04g1709 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Alju04g1709 289 Gene3D - 123 193 - -
Alju04g1709 289 SMART rrm1_1 8 81 IPR000504 GO:0003723
Alju04g1709 289 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 288 - -
Alju04g1709 289 MobiDBLite consensus disorder prediction 195 220 - -
Alju04g1709 289 Gene3D - 248 289 IPR038192 -
Alju04g1709 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Alju04g1709 289 FunFam Cleavage stimulating factor 64 121 193 - -
Alju04g1709 289 Pfam Hinge domain of cleavage stimulation factor subunit 2 127 191 IPR025742 -
Alju04g1709 289 CDD RRM_CSTF2_RNA15_like 7 83 - -
Alju04g1709 289 SUPERFAMILY RNA-binding domain, RBD 4 94 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1709 Alju-ChrAlju04 42420690 42421559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1709 8 86 Eukaryotic Initiation Factors Gene Family AT1G49760 32.911 5.08e-08 52.0