Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1705 ATGTCCAACCTCATTGCACAGTGCCGTTTTCGTGTCTGTGGTAGACTCTCTGCTCCAGAAGCCTTTGAAAGCACATCTACTGAGCCTAATTACCACAAAATCACAAAGCAAAATTTCGACCTCAAGCTTTGTATGGGTTTCGTACAACGTTGTCCTGATCATGATGTTCGTTTCATCGACGTTCCTTGGCAAGTTTCTTCTCATTACATCTCAGTGAAGGAGTTCTTCAAGAACGGTTCGAGTTTCTTAAGAAGAAACCTCTCTCATCATTTGCTCCCAAATGAGGATCTTGATTTGTTGATACCCTATCTCATCCGTGACGCTCGCAAATGGCACAAGAATCATCCTTGCCGTCGGCCTTCTCGCTGCAAAGATGGTTTTGTGGCAATTCCTTTGGTTATTGAAATCACTGTCGTATTGAATGAGAATGTCAGCCTCGAAGATGCTGGGGATGATACGGAGCAGCAGATAAGGATGATTCCTACTAGTGAGGAAGTCATTCGATCGCTCGAGAAAATGGAGCTTCAAGAAGATGAAGATGTTGATTCAAATAAGAAGGATGCATGTTGTATTTGTCTTGAAGATTTCTCTAACAACGTAGGGGTTTCAACAATGCCTTGTCATCATGTTTTTCACCATGATTGTATAGTTCATTGGCTAAAAACTAGTCATTTATGTCCTTTGTGTAGATATTCAATGCCTGTAGACAATGATATTTAA 720 0.4111 MSNLIAQCRFRVCGRLSAPEAFESTSTEPNYHKITKQNFDLKLCMGFVQRCPDHDVRFIDVPWQVSSHYISVKEFFKNGSSFLRRNLSHHLLPNEDLDLLIPYLIRDARKWHKNHPCRRPSRCKDGFVAIPLVIEITVVLNENVSLEDAGDDTEQQIRMIPTSEEVIRSLEKMELQEDEDVDSNKKDACCICLEDFSNNVGVSTMPCHHVFHHDCIVHWLKTSHLCPLCRYSMPVDNDI 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1705 239 CDD RING-H2_PA-TM-RING 189 230 - -
Alju04g1705 239 SMART ring_2 189 229 IPR001841 -
Alju04g1705 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 82 234 - -
Alju04g1705 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 236 IPR013083 -
Alju04g1705 239 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Alju04g1705 239 SUPERFAMILY RING/U-box 173 235 - -
Alju04g1705 239 Pfam Ring finger domain 188 230 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1705 Alju-ChrAlju04 42375390 42376109 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1705 86 238 C3H Transcription Factor Family AT1G26800 27.673 6.35e-14 66.6