Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1678 ATGGCTTCTTCAAGCTTTGATTATTCTATAAACAGAAAAGTTATCAAAAAGCCACTTAAAGCCAACACTACCAAGTTGCCTCACAAAAAGGGAGTTTGGACACCACAAGAAGATGCCAAACTAGCTGAAGTTATCGCAATTCATGGCGCATCAAGGTGGGACTCCCTTTCAGCTAGAGCAGGCCTGAATAGGAATGGTAAGAGTTGCAGGCTAAGATGGTTGAACTATCTGAGACCTAATATCAAGAGGGGGAACATATCAGACCAAGAAGAGGATTTAATACTTCGGCTTCACAAACTCATCGGAAACAGGTGGTCATTGATTGCTGGAAGGCTACCAGGAAGAACAGATAATGAGATAAAGAACTACTGGAATTTTCATCTGAGAAAGAAAGAAAAGAAGAAGCAATTAGGGTTTTCAACAATAAGAGAAGATCGCAAAGACGAAGGAGTGATGATGATGGTGGAAGAGATCAAGATTCCTGCACAGGAATCAGAGCCAACAGTGGAAAAGAATCCAAATGAAGAAGGTGAAGAATATTCAATTAAGTGTGATGATTTTGATGAGAGTGGATTCTTTGATTTCTTCGATGAAGGTCCCTTGAATTTGGAGTGGGTTAGCAAATTCCTCGAATTCAATTAG 642 0.4003 MASSSFDYSINRKVIKKPLKANTTKLPHKKGVWTPQEDAKLAEVIAIHGASRWDSLSARAGLNRNGKSCRLRWLNYLRPNIKRGNISDQEEDLILRLHKLIGNRWSLIAGRLPGRTDNEIKNYWNFHLRKKEKKKQLGFSTIREDRKDEGVMMMVEEIKIPAQESEPTVEKNPNEEGEEYSIKCDDFDESGFFDFFDEGPLNLEWVSKFLEFN 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1678 213 ProSiteProfiles Myb-like domain profile. 78 128 IPR001005 -
Alju04g1678 213 SUPERFAMILY Homeodomain-like 27 124 IPR009057 -
Alju04g1678 213 Gene3D - 23 83 - -
Alju04g1678 213 CDD SANT 87 128 IPR001005 -
Alju04g1678 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 132 IPR017930 -
Alju04g1678 213 CDD SANT 33 77 IPR001005 -
Alju04g1678 213 FunFam MYB-related transcription factor 29 82 - -
Alju04g1678 213 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 24 163 - -
Alju04g1678 213 SMART sant 29 79 IPR001005 -
Alju04g1678 213 SMART sant 82 130 IPR001005 -
Alju04g1678 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 77 IPR017930 -
Alju04g1678 213 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
Alju04g1678 213 Pfam Myb-like DNA-binding domain 30 77 IPR001005 -
Alju04g1678 213 Pfam Myb-like DNA-binding domain 83 127 IPR001005 -
Alju04g1678 213 Gene3D - 86 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1678 Alju-ChrAlju04 41722138 41723384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1678 12 131 MYB Transcription Factor Family AT3G13540 64.167 4.11e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju04g1678 Myb_DNA-binding 1.6e-15 CL0123