Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1581 ATGGCTGCTCCTACTCCTACGCACCTCCCGGACCACTTCAAGTGTCCGATTTCGCTTGAGATAATGTCCGATCCTGTTATCCTCTCCTCCGGTCACACCTTTGATCGGTCTTCAATCCAACGGTGGCTCGACGCCGGCCATCGGGCTTGTCCAATTACGAAATTACCCCTCCCTGATTGCCCTTCCGTCATACCCAATCACGCTCTCAGAAGCTTGATTTCAAACTATTATCATATCTCAACATTCAAGCAGCAGCCTCCTCCCCAACCGGAAACCCTAATTTCCGCTATTACCTCTCGCTCGTCGTCGTTGGAGAGCAAAATTGAATTGCTTGACCAACTTACGCGCCTTTCCAAGCGTGACTCTGTTTTCCGTCGGCGGCTGACCGAGTCAGGAGTCGTGTCGGCCGTGCTGAACTGCGTTGACTCTGGTGAGCCTAGTCTACAGGAGAAAGCTCTTTCGTTGTTACTCAATCTTAGTCTCGACGACGATAACAAGGTGGGTTTGGTGGCGGAGGGTGCGATAGGGAAAGTTGTGGCTGTTCTGTTAGGTGGCTCACCGGATTGCCGAGCAGTGGCGGCAACCATGTTGACGAGTTTGGCGGTTGTGGAGGTGAACAAAGCCACAGTTGGAGCATATCCATGTGCTATAGGAGCTCTTGTTTCTCTTCTTCGAGATGGTGAAGGCAGGGAGAAGAAAGAAGCGGCCACAGCGCTCTATGCTATATGTTCTTTCCCGGATAATCGGAGGAGAGCCGTAGAATGTGGGGTGGTCCCGATTTTGCTAAGAAGTGTTGATTCTGGGCTTGAAAGGGCTGTTGAAGTTCTTGGTGTGTTGGCTAAGTGTAGGGAAGGTAGCGAACAAATGGAAAGGTATAATGGATTCATACCGATTTTAGTACGGGTGTTGAAGAATGGAAGCTCGAGGGGGATTCAATATGCCCTTTTAGCACTAAATTCTGTTTGCTGTAATAGTGAAAAAATGGTTCTGGAGGTGACTAAAGAAGGAATTTTGGATATTTGTCTGGGATTGCTGGAGGACGATAATGAAAAAATAAGGAGAAATTCGTCCGGTCTGATTAAGGTTCTGCGTGGCAACCATCGGGTTAGTTGA 1113 0.4897 MAAPTPTHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRACPITKLPLPDCPSVIPNHALRSLISNYYHISTFKQQPPPQPETLISAITSRSSSLESKIELLDQLTRLSKRDSVFRRRLTESGVVSAVLNCVDSGEPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGKVVAVLLGGSPDCRAVAATMLTSLAVVEVNKATVGAYPCAIGALVSLLRDGEGREKKEAATALYAICSFPDNRRRAVECGVVPILLRSVDSGLERAVEVLGVLAKCREGSEQMERYNGFIPILVRVLKNGSSRGIQYALLALNSVCCNSEKMVLEVTKEGILDICLGLLEDDNEKIRRNSSGLIKVLRGNHRVS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1581 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 83 IPR013083 -
Alju04g1581 370 SMART arm_5 324 365 IPR000225 GO:0005515
Alju04g1581 370 SMART arm_5 245 281 IPR000225 GO:0005515
Alju04g1581 370 SMART arm_5 282 323 IPR000225 GO:0005515
Alju04g1581 370 SMART arm_5 121 161 IPR000225 GO:0005515
Alju04g1581 370 SMART arm_5 162 202 IPR000225 GO:0005515
Alju04g1581 370 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Alju04g1581 370 FunFam RING-type E3 ubiquitin transferase 8 81 - -
Alju04g1581 370 SUPERFAMILY ARM repeat 93 363 IPR016024 -
Alju04g1581 370 Gene3D - 214 369 IPR011989 -
Alju04g1581 370 PANTHER U BOX DOMAIN-CONTAINING 10 355 - -
Alju04g1581 370 CDD RING-Ubox_PUB 10 59 IPR045210 -
Alju04g1581 370 SUPERFAMILY RING/U-box 6 77 - -
Alju04g1581 370 ProSiteProfiles U-box domain profile. 8 83 IPR003613 GO:0004842|GO:0016567
Alju04g1581 370 SMART Ubox_2 12 76 IPR003613 GO:0004842|GO:0016567
Alju04g1581 370 Gene3D - 88 213 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1581 Alju-ChrAlju04 38076655 38077767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1581 9 365 U-box Gene Family AT4G21350 62.192 2.24e-156 442