Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1563 ATGGAGCACAAGCAGGTTTTTCTGTCAGCATTGAGTGTTGGGGTTGGGATCGGAGCAGGCCTTGGGTTGGGCTCAGGGCTTGGAGGGATACGTGAGTCTGGTGATAAGCTTTATGATGAACAGATTGAGCAGGAGCTTTTGAGGCTGGTGATTGATGGAAAGGAATGCGAGGAAACTTTTCAAGAGTTTCCTCATTACTTAAGTGAAAAAACCCGAGAGTTATTGAAAAGCTCTGCATCTGTTCATTTGAGACAACATTTCTTTTCCAAACACACCCGGAACCTTTCACCAGCAAGCAGAGCAATTCTGCTTTCTGGACCTGCAGAATTTTACCTACAAGCTCTTGTCAAGGCTTTAGCACATCACTTTGAATCAAAGTTGCTGCTGCTAGATGTAGTTGACTTCTCTTTCAAGATACAGAGCAAATATGGATATGCAAGAGAGGAAGCATCTTCTAAAATGTCCTTATCTGAGGTGGCTTCCGAGAGAGTGTCTGGTTTGCTTGGATCCTTTTCAGCCCTCTCTTCAAATGGCAAAACTAAAGGCACTTTCCAAAAACACAGTAATGCTACTGGAAGTCCCAATGTTACTTCAAAGCTTCATGGCAGCAATGCTGCTTTCCAATCTGCTCCAGCAAATTCTGCTCCCTTGAAGCAGAAAAGCAGCTTGTGTGTCGATGAAAAACTCTTTATGCAGTCGCTTTATAAGGTCTTGGTTTCTGTGTCAGAAAAGAGTTCCATCATTTTGTACATCAGGGATGTTAACAAGATTTTCCTCCAATCAGAGCAACTGTATGATTTGTTTCATGAAATGCTAGGGCAACTTCCAGGGCCAGTGCTGATACTTGGTTCCAAGATTGCAGACAAAATCAAAAAACCTGGAGGTCTCCCACCATGGATTGTTTCCTCTCGCAAAGAGGAAAAATGTTCAAAAGTTGATGGAAGGCTTGCAGCATTATTCCCTTACAGCATTAAGATCAAAGCACCAGAAGATGAAACTGATCTTGAAGATTGGAAAGCCCAACTGAAAGAGAACAAGAAAACAATTAAGTGTCAAGATAACAGAAACCACATTGCTGAAGTACTGGCAGCAAATGATGTTGAATGTAAAGACTTGAATTCAATCAGCCATGAGGACACAAAGATACTAAGTAATCATATTGAAGAAATTGCAGTATCTGCAATATCTTATTACTTGACGAATACCAAGGATCCAGAGTATCGGAACAAAAAGCTTGTAATATCATCTGAGAGTTTGCGCCATGGTTTGGATCTATTTCGCAAAAAGAAAGGTGATGATGATGGAAAGAAGAAAGAGACTAATGGAAAGAAGGTATGTTTAAAGAAGAAAGAGACTAATGGAAAGAAGGATGTTAGTCCAGACAATCCCCATGAGAGGCACATAAGAGCAGAACTCATACCAGCAAATGAGATAGGAGTGACATTTGCAGATATTGGTGCATTAGACGAAGTTAAGGAATCACTCCAAGAGCTAGTCATGCTTCCCCTTCGAAGACCAGAACTCTTCAAAACTGGACTTCTTAAGCCTTGCCGAGGTATATTGCTTTTTGGACCCCCAGGTACTGGAAAAACAATGCTTGCAAAGGCAATCGCAAATGAAGCAGGAGCTAGTTTCATCAATGTCTCCATGTCTACCATCACATCAATGTGGTTTGGAGAAGCTGAGAAGCATGTCCGAGCTCTGTTCACGCTGGCTGCGAAGGTTTCTCCAACTATTATATTTATTGATGAGGTTGATAGCTTGCTCGGGCGACGAGCAAAATGTGGAGAGCATGAGGCTACAAGGAGGATTAAGAATGAATTCATGACCCATTGGGATGGTCTATTGACAAAACAACGTGAGCGGATTCTTGTTCTTGCTGCAACCAATAGGCCATTTGACCTTGATGATGCAATCATAAGACGGTTTGAGCGAAGATTCTTGGTTGGTCTTCCATCTGTCGTGACTAGGGAGATTATCTTGAAAACTATACTTGCTAAGGAAAATACTGAAAACTTAGACTTCAAAGAGGTTGCAGTCATGACAGAGGGATATACTGGGAGCGATCTCAAGAATTTGTGCACTGCTGCTGCTTATCGACCTGTCAGGGACCTAATAAAGCAGGAGAAATTGAAGGATAAGGATAAGGATAAAAAAGAGGCTGAAAACCAAAGCTCAGAGGCTGCTTCAAGTCCCAAAATGGATTCAGAAGAGCAAGACAAGAATGAGAAAGATGATGAAGGCCAAAGCTCAAAAGCTGCTTCAAGTCCCAAAGAGGATCCAAAAGAGAGAGGAAAGAATAAGAAAGATGCCGAAGGCCAAAGCTCAAAAGTTGATTCAAGTGATAAGGAGGGCGAAGAAGAGCCAGCAGTTACCTTGAGGCCTATAAATATGGAAGACATGATTCAGGCTAAGAAACAGGTTCCCGCAAGTTTTGATGCTCACGGACAAATTATGTATGAGTTGAAGCAGTGGAATGAGCTGTATGGAGAACGACTTTCTCTGTAG 2508 0.4203 MEHKQVFLSALSVGVGIGAGLGLGSGLGGIRESGDKLYDEQIEQELLRLVIDGKECEETFQEFPHYLSEKTRELLKSSASVHLRQHFFSKHTRNLSPASRAILLSGPAEFYLQALVKALAHHFESKLLLLDVVDFSFKIQSKYGYAREEASSKMSLSEVASERVSGLLGSFSALSSNGKTKGTFQKHSNATGSPNVTSKLHGSNAAFQSAPANSAPLKQKSSLCVDEKLFMQSLYKVLVSVSEKSSIILYIRDVNKIFLQSEQLYDLFHEMLGQLPGPVLILGSKIADKIKKPGGLPPWIVSSRKEEKCSKVDGRLAALFPYSIKIKAPEDETDLEDWKAQLKENKKTIKCQDNRNHIAEVLAANDVECKDLNSISHEDTKILSNHIEEIAVSAISYYLTNTKDPEYRNKKLVISSESLRHGLDLFRKKKGDDDGKKKETNGKKVCLKKKETNGKKDVSPDNPHERHIRAELIPANEIGVTFADIGALDEVKESLQELVMLPLRRPELFKTGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSMWFGEAEKHVRALFTLAAKVSPTIIFIDEVDSLLGRRAKCGEHEATRRIKNEFMTHWDGLLTKQRERILVLAATNRPFDLDDAIIRRFERRFLVGLPSVVTREIILKTILAKENTENLDFKEVAVMTEGYTGSDLKNLCTAAAYRPVRDLIKQEKLKDKDKDKKEAENQSSEAASSPKMDSEEQDKNEKDDEGQSSKAASSPKEDPKERGKNKKDAEGQSSKVDSSDKEGEEEPAVTLRPINMEDMIQAKKQVPASFDAHGQIMYELKQWNELYGERLSL 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1563 835 Gene3D - 652 729 - -
Alju04g1563 835 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 479 654 - -
Alju04g1563 835 Pfam AAA+ lid domain 672 715 IPR041569 -
Alju04g1563 835 SMART AAA_5 516 653 IPR003593 GO:0016887
Alju04g1563 835 Coils Coil 335 355 - -
Alju04g1563 835 Gene3D - 480 651 IPR027417 -
Alju04g1563 835 MobiDBLite consensus disorder prediction 733 790 - -
Alju04g1563 835 MobiDBLite consensus disorder prediction 709 724 - -
Alju04g1563 835 Pfam ATPase family associated with various cellular activities (AAA) 520 650 IPR003959 GO:0005524|GO:0016887
Alju04g1563 835 ProSitePatterns AAA-protein family signature. 623 642 IPR003960 GO:0005524|GO:0016887
Alju04g1563 835 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 41 831 - -
Alju04g1563 835 MobiDBLite consensus disorder prediction 709 797 - -
Alju04g1563 835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 707 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1563 Alju-ChrAlju04 37106450 37112508 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1563 480 711 Calmodulin-binding Proteins AT3G56690 39.831 3.13e-42 164