LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju04g1524	ATGCCTGATTTCAACAATGTGAACTCGTTCATGTCGGGAAATGGGTCGTCAGCGCAGTCTAGCTTCGCTTCCTTCAACTCTTACAATTCCAGACGACAAGCTAGGGGTGGTGGTGCGAGTAACGGTCGTTTTGGTGATCGTGGTCGTGGTGGTCGAGGCCGGAGTTTTGGAGAAGACGGCGATGTTTGTGGTGGTATCAATTTTGACGCATACGAAGATATTCCAGTGGAGGTCAGTGGTTCCGACGCACCCCCGCCGATCAATACCTTCGCAGAAGTAGAGTTGAGCGAGGGTTTGAACATGAATATCAAGCGATGCAAGTACGTCAACCCCACTCCGATTCAGCGTCATGCGATTCCCATCGCCGTTGCTGGTCGCGACTTGATGGCTGGTGCTCAGACCGGGTCAGGGAAGACGGCGGCGTTCTGTTTCCCGATTATATCTGGGGTTTTGAAGGATCGTTCTAGGTTTTTGCCTACTGCTCGTGAAGGCTGGATTGCTTATCCCAATGCGCTTATAATGTCACCAACTAGGGAGTTGTCATGTCAGATTCATGATGAGGCCAAGAAGTTCGCTTATCAGACCGGAGTGAAGATTGTTGCTGCTTATGGTGGGGCGCCCATGGCTCAGCAGTTTCGTAATTTAGAAAAAGGGGTGGACGTCTTAGTTGCAACTCCTGGGCGCCTAGTTGATATGATTGAGAGAGGCAGGGTTTCACTCACACGAATAGAATTCCTTGCGCTTGATGAGGCAGATCGCATGTTGGACATGGGCTTTGAACCTCAAATTCGGAAGATTGTTGAGCAAATGGATATGCCTCCACCAGGTGCTAGACAGACTATGCTCTTCAGCGCTACGTTCCCAGAGGATATACAGAAGCTGGCTGCGGACTTTCTTTCAAACTACATATTCTTAGCAATTGGAAGAGTTGGTTCCAGCACTGAATTGATTATACAAAAAGTTGAACTTCGTTCAGGATATGGACAAAAGAGACCATCTTTTGGATCTTCTCCGTTCTCAAAGGGTAAATGGGTTCGATGGAAAGGTGAGATTGGACCAGGGATGCTTTCATCTTCTGTCATTGTTGCATGA	1092	0.4844	MPDFNNVNSFMSGNGSSAQSSFASFNSYNSRRQARGGGASNGRFGDRGRGGRGRSFGEDGDVCGGINFDAYEDIPVEVSGSDAPPPINTFAEVELSEGLNMNIKRCKYVNPTPIQRHAIPIAVAGRDLMAGAQTGSGKTAAFCFPIISGVLKDRSRFLPTAREGWIAYPNALIMSPTRELSCQIHDEAKKFAYQTGVKIVAAYGGAPMAQQFRNLEKGVDVLVATPGRLVDMIERGRVSLTRIEFLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPEDIQKLAADFLSNYIFLAIGRVGSSTELIIQKVELRSGYGQKRPSFGSSPFSKGKWVRWKGEIGPGMLSSSVIVA	363

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju04g1524	363	MobiDBLite	consensus disorder prediction	1	58	-	-
	Alju04g1524	363	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	88	116	IPR014014	GO:0003724
	Alju04g1524	363	MobiDBLite	consensus disorder prediction	1	36	-	-
	Alju04g1524	363	CDD	DEADc_DDX3_DDX4	89	311	IPR044763	GO:0003724\|GO:0005524
	Alju04g1524	363	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	80	321	-	-
	Alju04g1524	363	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	119	305	IPR014001	-
	Alju04g1524	363	FunFam	Probable ATP-dependent RNA helicase DDX4	59	307	-	-
	Alju04g1524	363	SMART	ultradead3	107	320	IPR014001	-
	Alju04g1524	363	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	70	307	IPR027417	-
	Alju04g1524	363	Pfam	DEAD/DEAH box helicase	112	294	IPR011545	GO:0003676\|GO:0005524
	Alju04g1524	363	Gene3D	-	60	308	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju04g1524	Alju-ChrAlju04	35079240	35082071	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju04g1524	70	309	Eukaryotic Initiation Factors Gene Family	AT3G19760	31.667	7.28e-31	119