Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1480 ATGGTGGAGGAGGAGGGAGTTTTGCCGGACCATCTGCGCTGTAGCCGCACCGACGGCCGGCAATGGCGGTGCCGCCGGAGGGTCATGGATAATCTGAAACTATGTGAGATTCACTATCTACAAGGTCGTCATCGGCAATACAAGGAGAAGGTCCCGGAGTCGCTGAAGCTTCAGAGGAAGCGAAAGAATGGGAATAATGACAGCAAGAACGACTCTTTTGTTCTCGACAATGTTAAAATTAGGGCGCTGAACATAGGGAAGAAGGCGAACCTGATAAAGAAGAGGCCTAAATTCTCGGATTCTTCTGAAGCAGTCGAAGCTCATCCTGTGAAGAAAAAGGCCTTGAAACAAGGCGGTTTGCAGTTGGAGTTGATAAGGATTGTTCTGAAGAGGGAGATTGAGAAGAGGAAGAAGAAGCAAGGAGAGAACAAGAAGGAGGAGGAGGAGGAGGAGGAAGAGCTAATTCATTACAGCGATGGAGAGTTGACCAGAGAGTTACCCAATGGTGTTATGGCAATCTCTTCAGCTTCAACGCCCCAAGATTACAACAATGTCGGTTCATATTGTGATGTTAATGTGGGGATTGATCATAACACAATCACTCCACGTTACTTCAGGTCTAAGAATGTGGAGAAGCTTCCCGCTGGCAAGTTGCAGGTATTGCCTTTAGGGCGAAACTTGAAGAAGTTTAGGAGGAAAAAGTGTCACTGGTGCCTGAAAAGCGATTCTTGGAATCTCATTAAATGTTCAAGTTGTCAAAAAGAATTCTTTTGCATGGATTGCATCAGAGAACGGTACTTTGAAACTCAAAATGAAGTTAAGATGGCATGTCCAGTTTGTCGAGGAACATGCTCTTGTAAAGACTGCTTGGCAAGTCAATGTAAAGACAGTGAAAGTAAGGAATATTTGGCAAGTAAAGGCAGAGTTGACAGAATTTTGTGTTTCCACTATATGATCTGCATGCTTCTTCCTCTTATAAAACAAGTCAGTGAAGACCGTAATATTGAACTAGCAGAAGTGAAAAGTAAAGAGAAAAGAACCTCTGATATTCAAATCAATCAAGTTGAGTTTTGCTGTAATGAACAAAATTGCTGGATACCCAATAAATTGACAGATGGCATTGCCAGTGAAAATCACCTTTTGGATGTCATTTCCAATGGCAATTCGACTGCTACTTCATCAACGGACTGCACAATTTGTAATGGTTCTGGCAATTTATCTTGTCCCCCCACTGAGCTTGGTGGTTATGGTGATTGCCTCCTTGATTTGAGATGTGTCTTTCCCATAAGTTTGATCAAAGAAATGGAAACAAAAGCTGAAGAAATATCTTGCTGCTATGACTTTCCCGAATCATTGGATAAAAGTTCAAACTGCTCGCTTTGTCTCAATTCTGATAATAAGATTGGTAGATACAAACAGTGGCAAGAAGCAGCTCTAAGAGAAGATTCCGATGATAATTGCTTGTTTTATCCCACAGTTTTGGACATCAGTCGTGATAATTTTGAACACTTTCAGAAGCACTGGAGAAAAGGCCATCCAGTAGTAGTGCGAGATGTTCTCCAAAGTAAATCAAACCACAGCTGGGACCCGCTGGTCATGTTCTGTTCTTATCTTGAGCAGAGTATCACAAGATATCAGAATGATAAAGACTTACTTGAAACTTGTTTGGATTGGTGTGAGGTAGAAATTAACATTAAGCAGTATTTTTCTGGGTCTCTAAGATGTCAACCACAGAAAAATACTTGGCATGAGGTGCTGAAGCTGAAGGGTTGGTTGTCTTCCCAACTATTCAAAGAACAGTTTCCAACTCATTTTGCTCAAGTGATTGCTGCCCTACCACTTCAAGAATACATGAATCCCATGTCTGGTATTCTGAATTTAGCAGCAAATTTGCCACAAGGGAGTGCAAAACATGACATAGGGCCGTTTGTCTATATGTCATATGGCTGTGCTGATGAACAAGTTGATTCTGTAACAAAACTCTGTTACAACTCATATGATGTGGTTAATATCATGGCGCATTCAACAGATGTCCCTCTCTCTTCAGAACAACTTACCAAAATAAGAAAATTGTTGAAAAAGCACCGAAGGTTGTGTCAAAGTGAGTCTCCCAGAATTATTGCTGAGCAGATAGTGGGAGACAGTTTGAAAGAAAACTCATTATTGCATGCTGAAGACAAGGAACAAAATGGAGTGCAGAATATGGTTAGAGAAGAAATGAATTTCCTCCGGAGAGTTGACAGAACAACATATATCTCTACAGAGGCAGGAAAGGAAGCTAGTAAGAGTACGAACAGCAATATTTCCCAGGGTGGAGAATGTGATTCAGATACAGATTCTGATTCTGATTTTGAATCCACTGTACTTCATGGGACAGCCCAGAACACTCCATTGTCGACGCTTGATAATCCCAGATATTCCAGTGATAGCTCAAATAACAATAGGACTAAAAGCCTTGCTCATCATTCTGGTGCTCAGTGGGATGTATTTCGCAGACAAGATGTTCCAAAACTAATAGAATACCTTAAACGACATTGTATTGAATTTGCTGATACCCAGAACTACCAAAAGAAGATGATTCACCCAATTCTAGATCAGATCTTCTTTCTTGACAATACTCACAAAATGAGGCTTAAGGAGGAGTTTGAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTGCTGGATGTCCATATCAGATCAGGAATCCAAAGTGTTGTGTTCATGTGATACTTGAATTTGTGTCCCCTGAAAATGTTACCGAGTCTATTGAGTTGATTGATGAAGTCCATCTTCCTGAAGGACACATAGCAAGAGTGGATAAGCTGGAGATGAAGAAAATGGCCCTTTACAGCATGAGAACAGCGATAAAAGAAATAGGAGATCTTACATGTAAAAGGTGA 2922 0.4103 MVEEEGVLPDHLRCSRTDGRQWRCRRRVMDNLKLCEIHYLQGRHRQYKEKVPESLKLQRKRKNGNNDSKNDSFVLDNVKIRALNIGKKANLIKKRPKFSDSSEAVEAHPVKKKALKQGGLQLELIRIVLKREIEKRKKKQGENKKEEEEEEEELIHYSDGELTRELPNGVMAISSASTPQDYNNVGSYCDVNVGIDHNTITPRYFRSKNVEKLPAGKLQVLPLGRNLKKFRRKKCHWCLKSDSWNLIKCSSCQKEFFCMDCIRERYFETQNEVKMACPVCRGTCSCKDCLASQCKDSESKEYLASKGRVDRILCFHYMICMLLPLIKQVSEDRNIELAEVKSKEKRTSDIQINQVEFCCNEQNCWIPNKLTDGIASENHLLDVISNGNSTATSSTDCTICNGSGNLSCPPTELGGYGDCLLDLRCVFPISLIKEMETKAEEISCCYDFPESLDKSSNCSLCLNSDNKIGRYKQWQEAALREDSDDNCLFYPTVLDISRDNFEHFQKHWRKGHPVVVRDVLQSKSNHSWDPLVMFCSYLEQSITRYQNDKDLLETCLDWCEVEINIKQYFSGSLRCQPQKNTWHEVLKLKGWLSSQLFKEQFPTHFAQVIAALPLQEYMNPMSGILNLAANLPQGSAKHDIGPFVYMSYGCADEQVDSVTKLCYNSYDVVNIMAHSTDVPLSSEQLTKIRKLLKKHRRLCQSESPRIIAEQIVGDSLKENSLLHAEDKEQNGVQNMVREEMNFLRRVDRTTYISTEAGKEASKSTNSNISQGGECDSDTDSDSDFESTVLHGTAQNTPLSTLDNPRYSSDSSNNNRTKSLAHHSGAQWDVFRRQDVPKLIEYLKRHCIEFADTQNYQKKMIHPILDQIFFLDNTHKMRLKEEFEIEPWTFEQHVGEAVIIPAGCPYQIRNPKCCVHVILEFVSPENVTESIELIDEVHLPEGHIARVDKLEMKKMALYSMRTAIKEIGDLTCKR 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1480 973 Pfam JmjC domain, hydroxylase 822 917 IPR003347 -
Alju04g1480 973 MobiDBLite consensus disorder prediction 48 71 - -
Alju04g1480 973 ProSiteProfiles JmjC domain profile. 620 937 IPR003347 -
Alju04g1480 973 MobiDBLite consensus disorder prediction 754 820 - -
Alju04g1480 973 SMART cupin_9 601 937 IPR003347 -
Alju04g1480 973 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 10 362 IPR045109 GO:0032454|GO:0033169
Alju04g1480 973 MobiDBLite consensus disorder prediction 754 775 - -
Alju04g1480 973 Pfam WRC 9 50 IPR014977 -
Alju04g1480 973 MobiDBLite consensus disorder prediction 785 820 - -
Alju04g1480 973 SUPERFAMILY Clavaminate synthase-like 499 955 - -
Alju04g1480 973 Gene3D Cupin 492 944 - -
Alju04g1480 973 Coils Coil 129 151 - -
Alju04g1480 973 ProSiteProfiles Zinc finger RING-type profile. 235 281 IPR001841 -
Alju04g1480 973 MobiDBLite consensus disorder prediction 48 67 - -
Alju04g1480 973 ProSiteProfiles WRC domain profile. 8 54 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1480 Alju-ChrAlju04 32740043 32745321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1480 9 48 GRF Transcription Factor Family AT2G22840 50.000 1.86e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Alju04g1480 JmjC 6.9e-11 CL0029