Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1477 ATGGATTTTAATAGTGAAGAAATTGGTGCAGGAAAGAGAGTAGCAGAAGATGAACCTGTGAAGCAAGTGACTACAAAGAAGCAGAAGAGAGACGGGGTTGCTGAAAATCAAAAGAAGGAAAGCAATTCAGACGATTCCTTATCAGATTCTGGAAACTCAGATGAAGATTCTGGTTTGAATTATGATAAAATAACAGATGCAGCCATATTGCCTGAGAAATTATCTGATGCTGCTAAGAAAGAACCTGCTAAGAAAGTTTATTCAAGTAAAGCCTCAGGCCTAGATTCTGACAGCGGAACTAATGAGGATATCGACAATGTAACCACATCATTGAAGAAGTCGGTTGCTACTGCTGCAGATAATAATATATCTACTAAGAAGGTTGAGTCAAGAAATGACTCGTCCCATGATAGTGGCTTAGATGAGGATAATGTGGTCCATAAAACACATGTAACACCACCTTCCAAGAAGCTGCTAGCTTCCACTGTTGCACGGAGGGAGGGAATTGAGAAAAATTACGACTCCCGTGATGCATCAAGAGAAGGATTTGATCGATGCAATGTTTCAGAACAAAATGAGATCAAGGATAAACCTTTTACAACTCCTCAGAAAGATCCTAAAACAGGGTTTACTCCGGAAAAACAAAATGCCACGTCAAAAAAAATATTTGTTGGGAACTTATCATATGAGGTGAAAAGGGCCAATTTGGAAAATTTATTTAAGCATTGTGGAGAAATTGTTGATGTCTCTTTTGGTTTATATCGTGATGGCACATTTAGAGGCTTTGCTCATGTTGAGTTTGCCACTGAAGAAGCTGCACACAATGCCCTTATGTTGAATGGGACCGAGCTATTAAGACGTTTTGCCAGAATTGAGATAGCCCATGAAAAGTTTGCATATAACCCTAATAGCTGTTGTATGAACTGGAACGACTCATTGAAGGGGTTTCAAGCATCCTATGGAGAAGATGAGCCTACAATGTCAGCTACCTCAAAAGAACAAAATGCTACATCAAGGATGCTTTTTGTTGGAAACTTGTCATATAGTGTGGAAAAGGATGATTTGGAAAATTTATTTCAAGATTGTGGAGAAATTGTTGATATTCGTTTTGCCACAGATCGTGAAGGGAGGTTTAAAGGCTTCGCACATGTTATGTTTGCCACAGAAGAAGCAGCACAAACTGCCCTTATGTTGAACGGGAAGGAACTGTTAAGACGTTCTCTTAGGCTTAATCTAGCTCCGGAAAGGGGTGCATATTCCCGCAGTAGCAAGAATGAATTATTTCAAGAGGATACATCATTAGGAGGAAATGAGGCTAAAATGCCAGCTGCTCCAAAAGAACAAAATGCTGCATCAAAGACAGTATTTGTTGGAAACTTGTCATACAGCGTGGAAAGGGCTGATTTGGAAAATTTATTTAAAGATTGTGGAGAAATTCTTGATATCCGCTTAGCTACAGATCGTGAAGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGCCACTCCAAAAGCAGCACAAAATGCCCTTAAGTTGAATGGAAACGAACTGTTGAGACAATATATAAAGCTTGATTTGGCAAATGAAAAGATTGTGCATTCTTCCAATAGTAGTATTGGTGGGAACAGAGAAGACTCTGGAAATGTTGAGTCTCAAACAGTGTTTGTAAGGGGTTTTAATACATCCTTAAGAGAAGATGAGATTAAAACTAGCCTGGAAGAGCATTTCAAATCTTGTGGAATAATTTCCAGGATATCTATTGCAAGAGATTATGGCACTGGTTCTACTAAGGGGTATGTTTTTTTATTGTTAATATTGGCCAATTCCTTAGCTCACTGGATGATATGA 1848 0.3874 MDFNSEEIGAGKRVAEDEPVKQVTTKKQKRDGVAENQKKESNSDDSLSDSGNSDEDSGLNYDKITDAAILPEKLSDAAKKEPAKKVYSSKASGLDSDSGTNEDIDNVTTSLKKSVATAADNNISTKKVESRNDSSHDSGLDEDNVVHKTHVTPPSKKLLASTVARREGIEKNYDSRDASREGFDRCNVSEQNEIKDKPFTTPQKDPKTGFTPEKQNATSKKIFVGNLSYEVKRANLENLFKHCGEIVDVSFGLYRDGTFRGFAHVEFATEEAAHNALMLNGTELLRRFARIEIAHEKFAYNPNSCCMNWNDSLKGFQASYGEDEPTMSATSKEQNATSRMLFVGNLSYSVEKDDLENLFQDCGEIVDIRFATDREGRFKGFAHVMFATEEAAQTALMLNGKELLRRSLRLNLAPERGAYSRSSKNELFQEDTSLGGNEAKMPAAPKEQNAASKTVFVGNLSYSVERADLENLFKDCGEILDIRLATDREGRFKGFGHVEFATPKAAQNALKLNGNELLRQYIKLDLANEKIVHSSNSSIGGNREDSGNVESQTVFVRGFNTSLREDEIKTSLEEHFKSCGIISRISIARDYGTGSTKGYVFLLLILANSLAHWMI 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1477 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 296 IPR000504 GO:0003723
Alju04g1477 615 SUPERFAMILY RNA-binding domain, RBD 332 420 IPR035979 GO:0003676
Alju04g1477 615 MobiDBLite consensus disorder prediction 1 143 - -
Alju04g1477 615 SUPERFAMILY RNA-binding domain, RBD 211 298 IPR035979 GO:0003676
Alju04g1477 615 SMART rrm1_1 340 411 IPR000504 GO:0003723
Alju04g1477 615 SMART rrm1_1 454 525 IPR000504 GO:0003723
Alju04g1477 615 SMART rrm1_1 221 292 IPR000504 GO:0003723
Alju04g1477 615 MobiDBLite consensus disorder prediction 91 125 - -
Alju04g1477 615 MobiDBLite consensus disorder prediction 126 143 - -
Alju04g1477 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 339 415 IPR000504 GO:0003723
Alju04g1477 615 Gene3D - 309 427 IPR012677 -
Alju04g1477 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 552 602 IPR000504 GO:0003723
Alju04g1477 615 SUPERFAMILY RNA-binding domain, RBD 452 602 IPR035979 GO:0003676
Alju04g1477 615 Gene3D - 187 306 IPR012677 -
Alju04g1477 615 Gene3D - 429 547 IPR012677 -
Alju04g1477 615 Gene3D - 548 605 IPR012677 -
Alju04g1477 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 453 529 IPR000504 GO:0003723
Alju04g1477 615 MobiDBLite consensus disorder prediction 1 45 - -
Alju04g1477 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 287 IPR000504 GO:0003723
Alju04g1477 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 554 601 IPR000504 GO:0003723
Alju04g1477 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 408 IPR000504 GO:0003723
Alju04g1477 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 455 522 IPR000504 GO:0003723
Alju04g1477 615 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 23 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1477 Alju-ChrAlju04 32629400 32659179 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1477 341 602 Eukaryotic Initiation Factors Gene Family AT2G36660 23.704 8.14e-10 59.7