Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1438 ATGGCCTATGGGCACTATGTATCCCAGGAATGGAAACCCAGCACTAGCGAGGATGAAAACTCGGCCGATGGCTGTTTCAGTTGTAACATCTGCTTAGATTTTGCTCGTGAACCGGTAGTCACTCATTGCGGCCACCTTTACTGCTGGTCCTGCATCTACAAGTGGCTTCATCTCCAAACTGATTCCCTAACATCTGATGAGCACCCTCAATGCCCAGTTTGCAAGGCTTGTATATCCTCTACCACAATCATCCCTCTCTACGGCCGAGGACAGGCCTCACTGGCTCAAAGTGAGCACCACGATGAGAAGTCATCAGATCCGGACATTTTTATACCACCAAGACCACCTGCTGCAAGTGTTGAAGCTCCATTATTATCATCATCATCATCTAATCCTCCCCGTAATGCTCTTCCGAATCAGCATTTTGTTGCTTCTTCTCTAGACCATGAGAATGCTTCATCACCACAACAGATGGTTAATCTCGGTGCTACCTTGATGCCGGGTGTTAATCATCCTCTGCATGGGATGTTTGGGGAGATGGTTTATGCTAGAGTGTTTGGCGACCCAGGAAATATGTATGCGTACCGGAATTCTTATCACCTGGTGGGAACTAACAGCCCTAGATTGAGAAGGCAGGAGATGCAGGCAGACAAATCATTGAAGAGAGTATCAGTTTTCCTGTGTTGCTGCCTTATTTTGTGTCTTCTTGTGTTTTGA 717 0.4686 MAYGHYVSQEWKPSTSEDENSADGCFSCNICLDFAREPVVTHCGHLYCWSCIYKWLHLQTDSLTSDEHPQCPVCKACISSTTIIPLYGRGQASLAQSEHHDEKSSDPDIFIPPRPPAASVEAPLLSSSSSNPPRNALPNQHFVASSLDHENASSPQQMVNLGATLMPGVNHPLHGMFGEMVYARVFGDPGNMYAYRNSYHLVGTNSPRLRRQEMQADKSLKRVSVFLCCCLILCLLVF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1438 238 MobiDBLite consensus disorder prediction 120 139 - -
Alju04g1438 238 ProSitePatterns Zinc finger RING-type signature. 43 52 IPR017907 -
Alju04g1438 238 MobiDBLite consensus disorder prediction 1 22 - -
Alju04g1438 238 Pfam zinc finger of C3HC4-type, RING 28 74 - -
Alju04g1438 238 MobiDBLite consensus disorder prediction 122 139 - -
Alju04g1438 238 SMART ring_2 28 74 IPR001841 -
Alju04g1438 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 235 IPR045103 GO:0005783|GO:0006511|GO:0061630
Alju04g1438 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 111 IPR013083 -
Alju04g1438 238 ProSiteProfiles Zinc finger RING-type profile. 28 75 IPR001841 -
Alju04g1438 238 MobiDBLite consensus disorder prediction 94 113 - -
Alju04g1438 238 SUPERFAMILY RING/U-box 22 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1438 Alju-ChrAlju04 29804203 29804919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1438 24 224 C3H Transcription Factor Family AT4G27470 41.905 8.68e-46 151