Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1415 ATGAAGGGAAAGAAGAGGATTCCAAGAGGAGCCTCCGTGAACGAGATGGTGAGAAGACTAGGGATAAAAGTAAGGATAGAAGTGAAGGGAGACATAGGGATAGAGAAAAGAGGGATCGTGAGAGTCGACGCTAAGAGAGAGAGAAAAGTAGTGATTCTGACGAAAAACTTGATAGAGAAAGAGAGAAGCATAGAGATAGGGATAAGGATAGGACACGAGTTCATGATGAAGAAAGAGAAAGAGCTTAAGATAAGAAAAGGGAAAGAGATAGGGAAGATAGGGAACGGGAGAGGAGAGATAGAAGGGAGAAAGAAAGGGAGAAGGATAGAGAAAGGGAACGTTATAGGAGAGAGCGTGAAAGGGAGAGGGAAGGATAGAGAAAGAAAGCGGCACAAGAGAGATGATGATTACAAGGGTAGAGAGCAGGAGAAGAGTGTTAGCAAGTCAAGCAGGCAAACTGAGAATATTGAGGAGAGTCCAAGGAAAAAGAGTGGCTATGATAACTCAGATGCCAATGAAAGCAAACCAAGCCGTGAGGAGGAGAAGAGGGAAGAAGCTGAGAGAGAAAAGCAGGGTGAAGCAAGTGCTGATGAACCCAAGTTTGGAAAGGTTTGGACACTTGAAGGGGAATCTGATGAAGAAGAAGGAACCACTACAGGGAAGCCAAATACAGCTATGGATGTAGATGAAGATAACAAACCTTTGGATAAAGAACATAATGATTTGATGGCACTAGGTACTAGTGATGGATGTGTTACATCTAATTTACCGGATGAAGCGGATGGGTCTCATGCAGGTGAGGAAATTGATCCATTAGATGCTTTCATGAGTACTATGGTTTTGCCTGAAATTGAAAAGCTGAATAGTGCTGTGGCTCCTGAATCTTCTAATCAAACTGCTGACTTAAAGCCCAAAGATAACGATGACCAGCAAAGTAATGGTGGGAACCCTAGGAAAGGTTCAAATAAATCGATTGGGAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGAAGACCTTGAAATTGAGGGTGATCCATTAGATGAAGATGATGATGAATTTATGAAAAGAGTAAAGAAGACTAAAGCTGAGAAACTTTCTATTGTTGACCATTCAAAGATTGATTATAAGCCATTCAAGAAAAATTTTTATATTGAAGTAAAGGAGATTGCCAAGATGACTCCAGAAGAAGTTGCAGCATACAGGAAGGAGTTGGAGTTAAAGCTACATGGGAAGGATGTGTCAAAGCCTGTGAAATCATGGAATCAGATTGGACTTACTAGCAAAATTTTGGAGACAATAAAGAAGCTTAATTATGAAAAGCCTATGCCTATTCAAGCTCAGGCCCTCCCTGTAATTATGAGTGGTAGAGATTGCATAGGAATTGCTAAAACTGGATCAGGAAAAACCCTTGCCTTTGTTCTGCCAATGTTGAGGCACACCAAGGATCAACCACCAGTTGTTGCAGGAGATGGACCGATTGGACTTATAATGGCCCCTACAAGGGAGTTTGTTCAACAGATTCACAGTGATATAAAGAAATTTATAAAAGTACTTGGTCTAAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCCCAGCAAACAAGTGAATTGAAACGTGGTACTAAGATAGTTGTTTGTACTCCAGGTAGGATGATTGACATATTATGCACCAGTGGTGGAAAGATAACTAACCTGCGTAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGTATGTTTGACATGGGCTTTGAACCTCAAATCACTCGAATTGTTCAGAATATTCGACCAGATTGTCAAACTGTTCTTTTTTCTGCTACTTTTCCTCGTCAGGTGGAAATTCTGGCTCGTAAGGTTTTGAACAAGCCTGTTGAAATACAAGTTGGTGGAAGGAGTGTTGTTAACAAGGACATAACACAGCTAGTAGAGGTTAGGCCAGAAAATGAGAGGTTCTTAAGGCTCTTGGAATTACTTGGGGAATGGTATGAGAAGGGAAAAATTTTGATATTTGTCCACTCGCAGGAGAAATGTGATGCTTTGTTCAAGGATATGCTTAGACATGGTTATCCATGCCTTTCTCTTCATGGGGCTAAGGATCAGACAGATCGGGAATCCACAATTTCTGACTTCAAAAGTAATGTCTGCAATTTGTTGATTGTAACTAGTGTTGCTGCTAGGGGTTTAGACGTCAAGGAGCTTGAATTGGTTATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGTGTTGGACGTACAGGCCGAGCTGGTCGGAAGGGTTGTGCTATCACATTTATTTCAGAGGAAGAAGCAAGATATGCGCCAGATTTGGTTAAAGCTTTTGAGCAATCTGAACAAATAGTTCCTGATGACCTGAAAGCTCTTGCTGATGGATTTATGGCAAAAGTTAATCGAGGACTTGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAAGAAGATGAGGTGAGGAGAGCAGCAAAGAAAGCACAAGCCAAAGAATATGACTTTGATGAAGATAAGTCTGATTCTGAGGATGAAGATGAAGGTATTAGGAAGGCTGGAGGTGACATCTCACAGCATCCTGCTCTTGCACAGATTCTAGTTGCTGCCACCAAAACAAACACCCCTGCAATGCCCTCTACTTCTCAGGTAACTTCAAATGGTGGGCTGCCTGCTTCTTTGCCTGCTGTTCTTGGTCTCCAGACTGCAGGAGTCATGCCTGGGACGGGGCTGCCCATTGGTCCAAGTGATGGAGCAGCTCGGGCAGCATTAGCTGCTATGAACCTGCAAAATAAATTAGCAAAGATTGCTGGTGGAATGCCTGAGCATTATGAGGCTGAGTTGGAGATAAATGATTTCCCGCAAAATGCTCGGTGGAAAGTCACACACAAGGACACTCTAGGCCCTATTTCTGAGTGGACTGGAGCTGCTATTACAACGAGGGGGCAGTACTTTGCACCTGGCTGTGCAACTTCCTGGTGGCGCCCAACCAGGCAAATACTCTGTTGTATAATAGGGGATCTTTTAGCCGTTTTGAGTGTTCAATAG 3084 0.4264 MKGKKRIPRGASVNEMVRRLGIKVRIEVKGDIGIEKRGIVRVDAKRERKVVILTKNLIEKERSIEIGIRIGHEFMMKKEKELKIRKGKEIGKIGNGRGEIEGRKKGRRIEKGNVIGESVKGRGKDRERKRHKRDDDYKGREQEKSVSKSSRQTENIEESPRKKSGYDNSDANESKPSREEEKREEAEREKQGEASADEPKFGKVWTLEGESDEEEGTTTGKPNTAMDVDEDNKPLDKEHNDLMALGTSDGCVTSNLPDEADGSHAGEEIDPLDAFMSTMVLPEIEKLNSAVAPESSNQTADLKPKDNDDQQSNGGNPRKGSNKSIGRIIPGEESDSDYEDLEIEGDPLDEDDDEFMKRVKKTKAEKLSIVDHSKIDYKPFKKNFYIEVKEIAKMTPEEVAAYRKELELKLHGKDVSKPVKSWNQIGLTSKILETIKKLNYEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHTKDQPPVVAGDGPIGLIMAPTREFVQQIHSDIKKFIKVLGLRCVPVYGGSGVAQQTSELKRGTKIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDCQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPENERFLRLLELLGEWYEKGKILIFVHSQEKCDALFKDMLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIVTSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLVKAFEQSEQIVPDDLKALADGFMAKVNRGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYDFDEDKSDSEDEDEGIRKAGGDISQHPALAQILVAATKTNTPAMPSTSQVTSNGGLPASLPAVLGLQTAGVMPGTGLPIGPSDGAARAALAAMNLQNKLAKIAGGMPEHYEAELEINDFPQNARWKVTHKDTLGPISEWTGAAITTRGQYFAPGCATSWWRPTRQILCCIIGDLLAVLSVQ 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1415 1027 Gene3D - 631 804 IPR027417 -
Alju04g1415 1027 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 420 448 IPR014014 GO:0003724
Alju04g1415 1027 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 640 801 IPR001650 -
Alju04g1415 1027 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 575 583 IPR000629 -
Alju04g1415 1027 SMART ultradead3 439 644 IPR014001 -
Alju04g1415 1027 Pfam DEAD/DEAH box helicase 445 616 IPR011545 GO:0003676|GO:0005524
Alju04g1415 1027 MobiDBLite consensus disorder prediction 335 351 - -
Alju04g1415 1027 MobiDBLite consensus disorder prediction 836 868 - -
Alju04g1415 1027 CDD SF2_C_DEAD 641 771 - -
Alju04g1415 1027 MobiDBLite consensus disorder prediction 286 352 - -
Alju04g1415 1027 MobiDBLite consensus disorder prediction 226 243 - -
Alju04g1415 1027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 567 801 IPR027417 -
Alju04g1415 1027 SMART helicmild6 681 762 IPR001650 -
Alju04g1415 1027 MobiDBLite consensus disorder prediction 92 217 - -
Alju04g1415 1027 Gene3D - 372 630 IPR027417 -
Alju04g1415 1027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 778 IPR027417 -
Alju04g1415 1027 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 451 629 IPR014001 -
Alju04g1415 1027 PANTHER RNA HELICASE 366 840 - -
Alju04g1415 1027 FunFam probable ATP-dependent RNA helicase DDX17 382 632 - -
Alju04g1415 1027 Pfam Helicase conserved C-terminal domain 654 762 IPR001650 -
Alju04g1415 1027 CDD DEADc_DDX46 409 630 - -
Alju04g1415 1027 MobiDBLite consensus disorder prediction 92 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1415 Alju-ChrAlju04 29066229 29070494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1415 407 786 Eukaryotic Initiation Factors Gene Family AT3G19760 31.759 1.08e-58 206