Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1250 ATGGGGGGTTTGATCGATCTCAACACTACGGAGGACGATGAAACGCCGTCGTCTCTTTCCTCGGCGGCTTCTTCTTCGTCCTCTCACTCTGGTGTTGTAACTACTGCTTCGGTCCCTTCTTCTTCTTCGAACGCTGTGTGCTTGGAGCTATGGCACGCATGTGCGGGTCCAATGATCTCGTTGCCCAAGAAAGGAAGCGTTGTTGTGTACTTCCCACAGGGCCACATGGAACAGCAGCTTCAGGATTTTTCGGTGGATGCCTGTAATATCAATTTCCCATCTCATGTGTTCTGTCGCGTACTTGATGTTAAGCTCCATGCCGAGGAAGGGAGCGATGAAGTGTATTGCCAGGTCTTGTTGGTTCCTGAGAGTGAGCAAGTGGAACAAAAACTTCCAGAAGGAGAACTTGATGCTTATGGTGAAGAGGATGACGCTGATGCTGTGGTGAAGTCCACTACACCCCACATGTTCTGCAAGACTCTGACAGCTTCTGATACTAGCACTCATGGTGGATTTTCTGTGCCTCGTCGAGCTGCTGAAGATTGCTTCCCTCCTCTGGATTACAGCCAACAAAGACCTTCACAGGAGCTTGTGGCAAAGGATCTACATGGCCTGGAATGGAGGTTCCGACATATTTACAGAGGTCAACCAAGGAGGCATTTGCTCACAACTGGATGGAGTGCATTTGTAAACAAGAAGAAGCTTGTGTCCGGAGATGCTGTGTTGTTTCTTAGGGGCGAGGATGGAGAACTGAGATTGGGAATTCGTAGGGCTGCTCAATTAAAAAGTGGTGGTACTTTATCAGTGCCATCTGCTCATCAGTTGAATCCTAGCACTCTCATGGATGTGATTAATGCTTTATCCACAAAATGTTCTTTTAATGTGTACTATAATCCCAGGGTTAGCTCTTCAGGATTCATAATACCCCTTCACAAATTCTTGAAGAGCCTTGATCGTTCATATTTGGTTGGAATGAGGTTCAGGATGCGTGTTGAAACTGATGAAACTACAGAGAGAAGGTGCACTGGATTAATTGTTGGAATGAGTGATGTGGATCCTATTAAGTGGCCTGGATCAAAATGGAAATGCCTGGTGGTCAGGTGGGATGACATTGAAGGCCCCAGGCATAATAGGGTTTCCCCTTGGGAGATTGAGCCGTCTAGTTCTGCTCCCACTTCCAATAATTTCATGGCAGCTAGTTTTAAGAGGAACAGGATTGGTCTGCCTCCAGAAAAGCCCGAATTTCCAGTCCTGAATAGGATTGGAGGATCAGACTTTGGGGAATCATTGAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATATTGGGCGTTAATACCCCATATGTTGGTATCAATGCTCAGAGTCACCAATCATCTGTAAGTAGGTGCTATCCTGGGTCAAACTGTTCCAGAATTGTGGCAGCAGGAAATAATGTCAGGGTCCCCCAAGTGAGTTCTGACATGTCATGCTGTGGCATAGGCTTTAGTGAATCTTCACGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCATACAGAACCTTGTCTGCTAATGAGGTTCATAGAAATGGTTGCTTTGGAATCTTTGGTGGTAGTCAATTGCTGGGGTCCAGAAATCAATGGTCGACCCAGATGCTGGATAATTCTTCCCATATGCATCCATCTGGGCCGGTTTCATCCCCATCATCTGTTCTGATGTTCCAGCAAGCAGCCAATCCACTTTCCAACTTTGATTATGGAAATAAAATTAATCAAGAAATGGAGAGAAAAATGCACTACCTAGGTTCATATACTTCTGAAGTGAAAGGTAGAAAATTAGCACAATCCCCATCTTATGGGCCTGGATCCTGTGGCCAAGTTCAGGAAGGAACAAATTCTTTTGGTACGTCAAATTTTCATAATCATCTGGTCACAGAAAGTTCAGAGGATTCTCTTTTGCCGCTGAAAGGTAGCCGAGAGTTGGTTTCATCATGTAAAAGTAGCTGCAGACTCTTTGGTTTTTCATTAACTGAGGAAAATCATGTTACCCATAAAGAAGCAGGCTCCTCCACAATCACTTGTCAATTAAATTCTGGACCTTCCTTTATAAGACAAGTTGGGGATGAACTTCAGCTAGGGCATTCATTCAGGAGCAAGGCGGCTGGAAGCAACTGTACCAAAGGTGTACTGCGGTATTGA 2190 0.453 MGGLIDLNTTEDDETPSSLSSAASSSSSHSGVVTTASVPSSSSNAVCLELWHACAGPMISLPKKGSVVVYFPQGHMEQQLQDFSVDACNINFPSHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEQKLPEGELDAYGEEDDADAVVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGGTLSVPSAHQLNPSTLMDVINALSTKCSFNVYYNPRVSSSGFIIPLHKFLKSLDRSYLVGMRFRMRVETDETTERRCTGLIVGMSDVDPIKWPGSKWKCLVVRWDDIEGPRHNRVSPWEIEPSSSAPTSNNFMAASFKRNRIGLPPEKPEFPVLNRIGGSDFGESLRFQKVLQGQEILGVNTPYVGINAQSHQSSVSRCYPGSNCSRIVAAGNNVRVPQVSSDMSCCGIGFSESSRFQKVLQGQEILPSQPYRTLSANEVHRNGCFGIFGGSQLLGSRNQWSTQMLDNSSHMHPSGPVSSPSSVLMFQQAANPLSNFDYGNKINQEMERKMHYLGSYTSEVKGRKLAQSPSYGPGSCGQVQEGTNSFGTSNFHNHLVTESSEDSLLPLKGSRELVSSCKSSCRLFGFSLTEENHVTHKEAGSSTITCQLNSGPSFIRQVGDELQLGHSFRSKAAGSNCTKGVLRY 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1250 729 CDD B3_DNA 155 257 IPR003340 GO:0003677
Alju04g1250 729 SUPERFAMILY DNA-binding pseudobarrel domain 150 264 IPR015300 -
Alju04g1250 729 Pfam B3 DNA binding domain 157 258 IPR003340 GO:0003677
Alju04g1250 729 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 44 684 IPR044835 GO:0003677|GO:0006355|GO:0009725
Alju04g1250 729 ProSiteProfiles B3 DNA-binding domain profile. 157 259 IPR003340 GO:0003677
Alju04g1250 729 Pfam Auxin response factor 284 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Alju04g1250 729 Gene3D - 321 393 - -
Alju04g1250 729 MobiDBLite consensus disorder prediction 10 35 - -
Alju04g1250 729 Gene3D - 155 259 IPR015300 -
Alju04g1250 729 SMART B3_2 157 259 IPR003340 GO:0003677
Alju04g1250 729 FunFam Auxin response factor 155 259 - -
Alju04g1250 729 MobiDBLite consensus disorder prediction 609 628 - -
Alju04g1250 729 MobiDBLite consensus disorder prediction 1 35 - -
Alju04g1250 729 FunFam Auxin response factor 320 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1250 Alju-ChrAlju04 22449102 22457908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1250 38 709 B3 DNA Binding Superfamily AT5G60450 41.581 5.87e-146 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju04g1250 B3 2.5e-22 CL0405