Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1213 ATGGCTTCTTCTAACAGACACTGGCCTAGCATGTTCAAGTCCAAGCCCTGCAACCCCCACCACCACCATCCATGGCAGCACGACATGAACCCCTCCTCCCTCATCTCCTCCGCCGCCGCCGCCACCTGCCACCGTACCCCTTACTCTTCTTCTTCCTCTCCCTCCTCAGGTTGTGAGGAGAGAAGTCCAGAGCCGAAGCCGAGGTGGAATCCAAAACCGGAACAGATTCGGATTCTGGAAGGGATCTTCAATTCAGGGATGGTGAATCCTCCCAGAGATGAGATCCGAAAGATCAGAGCTCAGCTTCAAGCGTATGGTCAAGTTGGTGACGCTAATGTCTTTTACTGGTTCCAGAATCGTAAATCCAGAAGCAAACACAAACTTCGCAACCTCCAAAACTCCAACAACAAGATCACCAACAACAACAATATCACACTCGAATCATCATCAATAACCCCACCGCCGCCACCTCCTCGTCAGTTTTCTCCTTCCAATTCTTCATCACCTGATAACAAATCTTCTCGTAATTCTTCTTCCAAGGAAATCATCAGTATCCTTCCTTCTTTCAAGCCGCCATCATCATCTTCATTCTCCATTAATGGCTTCTCTTCTGATATAATCCTCCCAAGTTCTCCTTCTTCTGGTGGTGGTTCTTCTGTGAGTAATTATCACCAACCCACCACATATTTTCAGACCCATAATAATGTGACCCCTCTTTCTGAGCCTTTCTTCTTTCCTGCTTCTTCTTCTGCTTCAACTCATCAAGGGTTTTCCTTCTCTGAGCTGTCTGGTCTTGTTCAGCATCAAAACGTTGGGCCTTGCACTAGTCTCTTGCTCAGTGAGATGATGAATAATCAGAAGAAAGAACAAGATCATAACAAGAATAATATGAAGAGTACTATAATGAATCATCATCATCTTAGTCTCTCTGTGGTAGCTTCTTCTTTTGTAACTCCCACCATTCATCACAGTACTGTTGTGCCTTCTATGGCTCCTGCAACAACAACCACCACCACCACTAGTGTTACTGTTCCATCCCTCCTCGTCCCTCAAATTCAAGGGGAGGAGTCAAGTGGTACGGCAGCGAAATCCATTGTATACATAAACGACGTCGCATTTGAGGTGTCTGTGGGTCCCTTCAACGTGCGTGCGGCCTTTGGTGAAGACGCTGTTCTAGTGCACGCGGCAACAGGACACCCTGTCCTCACCAACGAGTGGGGCGTCACCCTCCAGTCACTCCAGCACGGCGCATTTTATTATCTGGTGTGCATATATAGAAAAGAGAAAGTTGAAGGTGATGGGTTTTAG 1308 0.4717 MASSNRHWPSMFKSKPCNPHHHHPWQHDMNPSSLISSAAAATCHRTPYSSSSSPSSGCEERSPEPKPRWNPKPEQIRILEGIFNSGMVNPPRDEIRKIRAQLQAYGQVGDANVFYWFQNRKSRSKHKLRNLQNSNNKITNNNNITLESSSITPPPPPPRQFSPSNSSSPDNKSSRNSSSKEIISILPSFKPPSSSSFSINGFSSDIILPSSPSSGGGSSVSNYHQPTTYFQTHNNVTPLSEPFFFPASSSASTHQGFSFSELSGLVQHQNVGPCTSLLLSEMMNNQKKEQDHNKNNMKSTIMNHHHLSLSVVASSFVTPTIHHSTVVPSMAPATTTTTTTSVTVPSLLVPQIQGEESSGTAAKSIVYINDVAFEVSVGPFNVRAAFGEDAVLVHAATGHPVLTNEWGVTLQSLQHGAFYYLVCIYRKEKVEGDGF 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1213 435 SMART HOX_1 64 131 IPR001356 GO:0003677
Alju04g1213 435 Coils Coil 121 141 - -
Alju04g1213 435 MobiDBLite consensus disorder prediction 45 59 - -
Alju04g1213 435 MobiDBLite consensus disorder prediction 125 180 - -
Alju04g1213 435 MobiDBLite consensus disorder prediction 1 32 - -
Alju04g1213 435 FunFam WUSCHEL-related homeobox 11 66 133 - -
Alju04g1213 435 CDD homeodomain 65 127 IPR001356 GO:0003677
Alju04g1213 435 ProSiteProfiles 'Homeobox' domain profile. 62 127 IPR001356 GO:0003677
Alju04g1213 435 SUPERFAMILY Homeodomain-like 62 129 IPR009057 -
Alju04g1213 435 MobiDBLite consensus disorder prediction 45 73 - -
Alju04g1213 435 Gene3D - 66 132 - -
Alju04g1213 435 MobiDBLite consensus disorder prediction 164 180 - -
Alju04g1213 435 MobiDBLite consensus disorder prediction 131 149 - -
Alju04g1213 435 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 422 IPR044557 GO:0003700|GO:0050793
Alju04g1213 435 Pfam Homeodomain 66 126 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1213 Alju-ChrAlju04 21338546 21341099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1213 1 133 Wox Gene Family AT2G33880 77.612 5.97e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Alju04g1213 Homeodomain 4.1e-14 CL0123