LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju04g1211	ATGGCGTCGTCATCATCATCGTCTTCCTCCCAACAAACAGAGCTTCTTCCTCTTAACCATGATGACTCTCAAGACATGGTCATCTACCAAGTCCTCACCGAAGCCAACGCTCTTCCACCTAATTCTCATACTACTCCTACTACTTCACCAATCCTTGGCCTCCATGGTGGTCAGGCGACGGCCAGGATCGCCAAGAAGAACTACCGGGGTGTGAGGAGGCGGCCGTGGGGGAAGTACGCGGCTGAGATCCGGGACTCGGCTCGCCACGGGGCGAGGCTGTGGCTGGGGACGTTTGAGACTGCCGAAGAAGCTGCCTTGGCTTATGACAGGGCTGCTTTCAGAATGAGAGGTTCCAAGGCTTTGCTTAATTTCCCTCCTGACTTTGTAGCTTCTACTTCTTCTATTCTCAGCCCAGAAAGATTGAATAATAAGGCTTCTTCTGATTCTGATTCAAGTGTTGTAAGTTCTGTTGAGAGTCGTAGTTGA	486	0.5123	MASSSSSSSSQQTELLPLNHDDSQDMVIYQVLTEANALPPNSHTTPTTSPILGLHGGQATARIAKKNYRGVRRRPWGKYAAEIRDSARHGARLWLGTFETAEEAALAYDRAAFRMRGSKALLNFPPDFVASTSSILSPERLNNKASSDSDSSVVSSVESRS	161

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju04g1211	161	MobiDBLite	consensus disorder prediction	139	161	-	-
	Alju04g1211	161	Pfam	AP2 domain	67	117	IPR001471	GO:0003700\|GO:0006355
	Alju04g1211	161	PRINTS	Ethylene responsive element binding protein signature	91	107	IPR001471	GO:0003700\|GO:0006355
	Alju04g1211	161	PRINTS	Ethylene responsive element binding protein signature	68	79	IPR001471	GO:0003700\|GO:0006355
	Alju04g1211	161	SMART	rav1_2	67	131	IPR001471	GO:0003700\|GO:0006355
	Alju04g1211	161	FunFam	Ethylene-responsive transcription factor 2	66	126	-	-
	Alju04g1211	161	Gene3D	AP2/ERF domain	66	126	IPR036955	GO:0003700\|GO:0006355
	Alju04g1211	161	PANTHER	DNA-BINDING DOMAIN	34	145	IPR044808	GO:0003700\|GO:0009873
	Alju04g1211	161	ProSiteProfiles	AP2/ERF domain profile.	67	125	IPR001471	GO:0003700\|GO:0006355
	Alju04g1211	161	SUPERFAMILY	DNA-binding domain	67	126	IPR016177	GO:0003677
	Alju04g1211	161	CDD	AP2	66	127	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju04g1211	Alju-ChrAlju04	21317516	21318001	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju04g1211	16	125	AP2-EREBP Transcription Factor Family	AT2G44840	54.310	6.40e-38	127

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju04g1211		AP2	3.6e-15	CL0081