LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju04g1210	ATGGAGGCGTCGTGGCTGGATTTGACGGATGTTAATCAGAAAACTAGTGATAATCATCATCATGCAGCTGCAAATTCATCAGAAGGGATTCTTGAGAACATATGGGCTAGGGTTGTCAGCACAACAAAAAATAATTCATGGGAAGGGCTTCCAAATCTTGATGGAAGGGACGAGTCATCGATGGAGATTCTTCAACGGCTTCCAAGTTTGGGAAGATGGATATCTATGGGAGCTGAAGCATGGGAAGAAATTTTATCTGATTTCCCACAAAGCCATCTTCAAGATACATGCAATTACAGTAACAATAATCTGGGGATTTGCAGAAACATTGAGTCAAATTGTAAAAAGGTAGAACAAGAAGAAAAAGAGGAAGGTGGTGGGATTGTGAGGGCAAAGAATAATAATAATAATAAGGAAGGTGAAAGCAGAAGACATTACAGAGGAGTGAGAAGAAGGCCATGGGGAAAATATGCAGCAGAAATAAGGGACTCATCAAGGAATGGAGCTAGGGTTTGGCTGGGGACATTTGAAACAGCTGAAGAAGCAGCTTTAGCTTATGATAAAGCAGCTTTGAGAATTAGAGGTCACAAGGCTTACTTGAATTTCCCTCTTGAGACTGTTGCAAATGCTTTAGGGTTTGACCTTAAAGGAAGTCACAGTAGTAATAATCCTAACAATCCTATTATTACAAGGTCTGTTTCTTCAACTTGTGATCAGGAGAATTATTCTAGGAAAAGAAAATTGAAAAATATTGAAGAACCTGCAGCTAAAAGGATGGCGAATTTGGGGGATGAAGTAGATGTTGTTGTGTTTCAGGACTTGGGGAGTGATTACTTGGATAGTTTGTTATCTTCTTTTTGA	861	0.3937	MEASWLDLTDVNQKTSDNHHHAAANSSEGILENIWARVVSTTKNNSWEGLPNLDGRDESSMEILQRLPSLGRWISMGAEAWEEILSDFPQSHLQDTCNYSNNNLGICRNIESNCKKVEQEEKEEGGGIVRAKNNNNNKEGESRRHYRGVRRRPWGKYAAEIRDSSRNGARVWLGTFETAEEAALAYDKAALRIRGHKAYLNFPLETVANALGFDLKGSHSSNNPNNPIITRSVSSTCDQENYSRKRKLKNIEEPAAKRMANLGDEVDVVVFQDLGSDYLDSLLSSF	286

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju04g1210	286	Gene3D	AP2/ERF domain	144	205	IPR036955	GO:0003700\|GO:0006355
	Alju04g1210	286	PRINTS	Ethylene responsive element binding protein signature	169	185	IPR001471	GO:0003700\|GO:0006355
	Alju04g1210	286	PRINTS	Ethylene responsive element binding protein signature	146	157	IPR001471	GO:0003700\|GO:0006355
	Alju04g1210	286	ProSiteProfiles	AP2/ERF domain profile.	145	203	IPR001471	GO:0003700\|GO:0006355
	Alju04g1210	286	CDD	AP2	153	203	IPR001471	GO:0003700\|GO:0006355
	Alju04g1210	286	SMART	rav1_2	145	209	IPR001471	GO:0003700\|GO:0006355
	Alju04g1210	286	FunFam	Ethylene-responsive transcription factor 2	144	205	-	-
	Alju04g1210	286	SUPERFAMILY	DNA-binding domain	145	205	IPR016177	GO:0003677
	Alju04g1210	286	PANTHER	DNA-BINDING DOMAIN	115	281	IPR044808	GO:0003700\|GO:0009873
	Alju04g1210	286	MobiDBLite	consensus disorder prediction	121	147	-	-
	Alju04g1210	286	Pfam	AP2 domain	145	196	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju04g1210	Alju-ChrAlju04	21276677	21277537	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju04g1210	30	286	AP2-EREBP Transcription Factor Family	AT4G18450	33.846	1.62e-41	143

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju04g1210		AP2	2.3e-15	CL0081