Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1195 ATGCCTATTCCTGAAGCACTTTCACGATTTTGGCTCTTCTTTCTTCTGCTCATCTCTTCTTTTTTCTTTCATTCCTATGGAGATGGTTACACCAAAGTTATAAGCATTGGCGCAATTATTGATGTTAACTCTCGTATTGGTAAAGAACAGAAAATAGCCATGGAAATTGGAGCTCAAAAATATAACAACATATCAAAGACTCACAAGCTGGCTCTTTATTTCAGGAACGCCTCTGAGGAAGCCTTCAGAGCCGTCTCTCTTGCTGAAGAGTTGATTGAAATGCAGAAAGTAGAAGTCATTATAGGGATGCGTACATGGCAAGAAGCAGCTCTAGTGGCTGAAGTTGGAAGCCAAGCTCAAGTTCCAATCATATCCTTTGTATCACCAGCAATAACCCCACCTTTGACACAAAAACGCTGGCCTTATCTGGTTAGACTAGCTAACAATGTCACTGCACATGTAAAATGCATTGCAGATATAGTGAATACTTTTAGTTGGCAAAGAGTAGTAGTAGTTTATGAAGAAGATGGCTATGTTGGTGGAGACTATGGGATGCTCTCTCTCCTTTCTGAGGCTCTTCAAGACTTTGGTTCACTAATTGAACACCGTTTAGCGCTTCCATCAATTTCTTTTCTGCCGAACCCAGGAGAGATAATTAATGAAGAGCTAAAGAAGTTGGTAAACAAAACTCAATCTCGTGTTTTCATTGTTTTGCACTCATCCTTAGAAATGGTGACCCATTTGTTCAGAGAAGGTTCAAAGATGGGACTTGTGGGTAAAGATTCAGCTTGGATAATCTCAGAGAGCATAACTAATTTGCTTGACTCTGTGGATAAGTCTGTCATTTCCTCCTATATGGAAGGGTCTTTAGGAATCAAGATGCATTACTCAGAAAAAAGCAGTGAGTATCAAGATTTTCAAGCTCAGTTCCGGAAAAAATTTCGTGCAAAGAATCCTGAGGAAGACAATAGCAACCCAGGATTTTATGCTTTGCAAGCATATGATAGCATCAAAGTTGTCATTCAAGCAGTAGAAAGAATGGCAAGGGACACAAGTAGCAGCCCACAAGCTTTGCTAAGAGAAATATTGTCTAGCAGTTTCAATGGTTTGAGTGGCGAAATCCGTTTTCAAGCAGGTCAGCTCTTGCAGAATCCTATCCTTAGGATGGTTAATGTAGTTGGCAAGAGTTATAAAGAAATAGACTTTTGGACTCAAGAAAATGGATTCACCACAAGCCTGCCTACAGGAAAAAGTGAAGAAAATGCTACTACTAACACACAAAGTTTGGTTGGTGTAGTACAATGGCCAGGAAATTTAGAGAGAACTCCTAAAGGTTGGAATATGCCTGTTAAGAAAAACCCAATGAAAATTGCAGTTCCAGGAAGAACTTCATTTTCAAAGTTTGTCAAGGTTGAATATGGAAAAAGTCCAGATCAGAATCAATATAAAGGATTCTGTATTGAGGTTTTCAACAAGGTGCTTGAGCTTTTGGGATATGATCTACCCTATGAGTTTCATCCCCTCAACGTAACTTATCCTGATCTGGTTCAACTCGTGTATAACAAGACTTATGATGCAGTGGTTGGTGACATGACCCTACTAGCAGAGAGACTGCAATATGTAGATTTTACTGTGCCATATGCAGAATCAGGATTGTCCATGGTAGTTCCAGTGAAGTCTCAAGAGTCAAAATGGATGTTTCTAAAGCCATTCACCAGGCAAATGTGGGCAGTAATTGGTGCAATCATGATTTACACTGTGTTCGTAGTTTGGTACCTTGAACGAGTACCCAATCCAGAGTTTCAAGGCAATTGGAAGAGACAATTCAGCACTGCTCTTTGGTTTACCTTCTCCTCCCTATTCTTTGCACATAGGGAGCAAGTGCAGAGCAACTTGTCTCGTGTGGTGATGGCAGTGTGGCTTCTTCTAGTTATGGTTCTGAGTTCAAGCTACACAGCTAGCCTTTCTTCAATGCTAACAGTTCAACAACTGCAGCCAAACGTCACAAGCATCGAGTGGCTGAAGATGAACAACATGAAAATTGGTTGTGATGGTGACTCATTTGTTAGGACATACCTCGAGAAAGTCGAAAAGTTCAAGCCAGAAAACATCATCAACATAAGTAGTGAATACAATTATGATGGTGTATTCCAAAACAAGTCAATAACAGCAGCTTTTCTCGAACTCCCTTATGAAAAAGTATACCTAAGTACTTACTGCAATGGATATTCTGGCTCCACACCAACCACCAGATTTGGAGGCCTAGGCTTTATGTTCCAAAAAGGCTCCCCAATGGCCAGAGATTTTTCTAAAGCAATATTGCAGCTTTCAGAGAAGGGAGAACTAACCAACTTGGAAGCTCAGTGGTTATATCACTCAAACGAGTGCACCAACAACTCAAGCTCCAACGATACACAAAGTCTGAAGCTTGAAAGTTTCTGGGTTCTCTTTGTCATTTCTGGGGTCACATCTACTATCTGTTTACTATTTTCTATCATTCAGTCGCAAGGATTTTGTCAGCTAACTCAAAATATGACTCAAGAAGGCAATGGACTCACAAGTGATATGACAGCTTGGATAAGAACACTTGAATTAGCTAAGCGGATTTATAGCAAAAAACTTACTCAGGAAACTGATTTGTACGGGCCTAATATTGGGACACAACAAGATGTAACTGACTGTTCTTCCAGATGGGACTATGTCAGCACCACTGATTCTCCTATGCATCAACAAGATACTGCATCCCCAGCATCAACAGTCATTGTGGTTTCTTCACCACCACCAGAGACAGAAATGGTAACCCTGGATAATAGATAA 2817 0.404 MPIPEALSRFWLFFLLLISSFFFHSYGDGYTKVISIGAIIDVNSRIGKEQKIAMEIGAQKYNNISKTHKLALYFRNASEEAFRAVSLAEELIEMQKVEVIIGMRTWQEAALVAEVGSQAQVPIISFVSPAITPPLTQKRWPYLVRLANNVTAHVKCIADIVNTFSWQRVVVVYEEDGYVGGDYGMLSLLSEALQDFGSLIEHRLALPSISFLPNPGEIINEELKKLVNKTQSRVFIVLHSSLEMVTHLFREGSKMGLVGKDSAWIISESITNLLDSVDKSVISSYMEGSLGIKMHYSEKSSEYQDFQAQFRKKFRAKNPEEDNSNPGFYALQAYDSIKVVIQAVERMARDTSSSPQALLREILSSSFNGLSGEIRFQAGQLLQNPILRMVNVVGKSYKEIDFWTQENGFTTSLPTGKSEENATTNTQSLVGVVQWPGNLERTPKGWNMPVKKNPMKIAVPGRTSFSKFVKVEYGKSPDQNQYKGFCIEVFNKVLELLGYDLPYEFHPLNVTYPDLVQLVYNKTYDAVVGDMTLLAERLQYVDFTVPYAESGLSMVVPVKSQESKWMFLKPFTRQMWAVIGAIMIYTVFVVWYLERVPNPEFQGNWKRQFSTALWFTFSSLFFAHREQVQSNLSRVVMAVWLLLVMVLSSSYTASLSSMLTVQQLQPNVTSIEWLKMNNMKIGCDGDSFVRTYLEKVEKFKPENIINISSEYNYDGVFQNKSITAAFLELPYEKVYLSTYCNGYSGSTPTTRFGGLGFMFQKGSPMARDFSKAILQLSEKGELTNLEAQWLYHSNECTNNSSSNDTQSLKLESFWVLFVISGVTSTICLLFSIIQSQGFCQLTQNMTQEGNGLTSDMTAWIRTLELAKRIYSKKLTQETDLYGPNIGTQQDVTDCSSRWDYVSTTDSPMHQQDTASPASTVIVVSSPPPETEMVTLDNR 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1195 938 FunFam Glutamate receptor 153 324 - -
Alju04g1195 938 FunFam Glutamate receptor 564 702 - -
Alju04g1195 938 Pfam Ligand-gated ion channel 791 822 IPR001320 GO:0015276|GO:0016020
Alju04g1195 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 833 IPR015683 -
Alju04g1195 938 SMART GluR_14 456 792 IPR001320 GO:0015276|GO:0016020
Alju04g1195 938 SUPERFAMILY Periplasmic binding protein-like II 430 791 - -
Alju04g1195 938 SUPERFAMILY Periplasmic binding protein-like I 31 446 IPR028082 -
Alju04g1195 938 Pfam Bacterial extracellular solute-binding proteins, family 3 479 790 IPR001638 -
Alju04g1195 938 Pfam Receptor family ligand binding region 61 392 IPR001828 -
Alju04g1195 938 Gene3D - 454 563 - -
Alju04g1195 938 CDD PBP1_GABAb_receptor_plant 35 413 IPR044440 -
Alju04g1195 938 Gene3D - 149 407 - -
Alju04g1195 938 PIRSF IGluLR_plant 5 921 IPR017103 -
Alju04g1195 938 Gene3D - 564 704 - -
Alju04g1195 938 FunFam Glutamate receptor 454 566 - -
Alju04g1195 938 Gene3D - 36 383 - -
Alju04g1195 938 CDD GluR_Plant 453 790 - -
Alju04g1195 938 Gene3D - 743 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1195 Alju-ChrAlju04 20910169 20914362 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1195 10 829 Ion Channels AT2G29120 33.765 7.91e-147 458