LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju04g1110	ATGAAACAGCACTTGCATGTCAGGCACAGACCATTGGCCATCCTGTTATTATTCTTTGTCGTCTTAACTGTTTTTGCTGATCCATGCACAGTAACAAGGTGCGGCGTTGATGGACCAGAGATTCGGTTCCCCTTTAGGCTCAAAGGCAAACAGCCACAATGGTGTGCTTATAATTCAGGCTTTGATCTTTACTGTTCTGAAACAAACCACACAGTTCTCGAGCTTCCTTTCTCTGTCAAGGTTATCGTACAAGGCATAGACTATAAATCACAAGTCATTACTGTGTCTGACCCTGATGGATGCCCTGCTCATCTCAATTTATATGCATCTCCTTTTCGGTCAAATGATTATTCTGAATCAAGCGGATATGCGGTATTCAATTGCTCAGGAACATCTCGTAGAGATTCACAATTTGGTCAATGGGGGAACTTTTCTTGCCTTGATGTTCCTGGCTATGAAGTTTTAGCTATACCATATGCAGAGACAATTATGGACTATCCTCTTCTATCATGCACAAGAATTCATGGTTATGTGTCAGTGCCTAATTCATTTTACAATCACAATAACCTCATATATCTATATTGGGCAGAACCAGATTGCAGGAAGTGTGAAGAAGATGGAGGGCAGTGTAAATTGAGAGAAAACAAAGCTGAACGTGAACCTGAATGTTTCCAAAGCCCCCATAAAGGTCCATCGAAAAAGATAGTACTTGCTGGTGAAATCCTAGGCCCGTTTCTGCTCATCTTTGTTGCCTTTATTGTTTATTGGGTTCTTGCAGCTACCGTGGAGAGGCAAGGTTACATAAAAATTAAACAGTTTTTGGTGGACTACAAAGCACTTAGGCCTGCTAGATATTCGTATGCAGATATAAAGAGGATCACAAATCAGTTTAAGGATGAACTTGGACAAGGAGCTTATGGAACTGTCTTTAAAGGGAAGCTATCTAATGAGATTCAGGTGGCTGTCAAGCTTCTAAACACTTCAACTGGGAATGGACAAGAGTTCATCAATGAAATGGAGACCATGTGTCAGATTCACCATGTCAATGTGGCTCGCTTGGTTGGCTACTGTGCCGATGGTTTCAAACGAGCTTTGGTCTATGAGTTTTTACCCAATGGCTCTTTGCAGAAATTCATAACTTCAGCTGATAGAGAGGATCTTTTCCTGGGTTGGGGAAAGCTTCAGGATATTTCTCTTGGCATAGCCAAAGGAATTGAGTATCTTCATGAAGATTGTGACAAACGAATTCTCCACTTTGATATCAAACCTCATAACATTCTTTTAGATGAGAAATTCACACCCAAAATATCTGATTTTGGTCTGGCCAAACTTTGTTCTAAGGATCAAAGCAATGTGTCAATGACGACTGCTAGGGGCACTTTGGGTTACATTGCACCGGAGATATTCTCTCGAAACTTTGGTAATGTATCTTATAAATCTGATGTTTACAGTTATGGAATGTTACTACTTGAGATGGTTGGAGGAAGGAAAATCACAGATGTCACAGAAGAAAATGGTGAGCAAGTTTACTACCCACAATGGATTTATAATCTTCTAGAGAACAATGAAGACATACAAATTCATATAGAAGGAGAGGAGGACACTAAAATTGCAAGGAAGCTATCTATTGTTGGACTTTGGTGCATTCAATGGCATCCGGCAAATCGTCCAACCATGAAAAATGTGGTTCAAATGTTGGAAGGGGATGACGGAAAGCTAATAATGCCTCCTAATCCTTTTGGCTCTACACACGCAACTAGAACAAGAGCTGTTAATGGAGTAAGGCGATTGCAACCAGAGTTATCTGTCATTTCTGAAATAGAGTCAAGTTGA	1833	0.4043	MKQHLHVRHRPLAILLLFFVVLTVFADPCTVTRCGVDGPEIRFPFRLKGKQPQWCAYNSGFDLYCSETNHTVLELPFSVKVIVQGIDYKSQVITVSDPDGCPAHLNLYASPFRSNDYSESSGYAVFNCSGTSRRDSQFGQWGNFSCLDVPGYEVLAIPYAETIMDYPLLSCTRIHGYVSVPNSFYNHNNLIYLYWAEPDCRKCEEDGGQCKLRENKAEREPECFQSPHKGPSKKIVLAGEILGPFLLIFVAFIVYWVLAATVERQGYIKIKQFLVDYKALRPARYSYADIKRITNQFKDELGQGAYGTVFKGKLSNEIQVAVKLLNTSTGNGQEFINEMETMCQIHHVNVARLVGYCADGFKRALVYEFLPNGSLQKFITSADREDLFLGWGKLQDISLGIAKGIEYLHEDCDKRILHFDIKPHNILLDEKFTPKISDFGLAKLCSKDQSNVSMTTARGTLGYIAPEIFSRNFGNVSYKSDVYSYGMLLLEMVGGRKITDVTEENGEQVYYPQWIYNLLENNEDIQIHIEGEEDTKIARKLSIVGLWCIQWHPANRPTMKNVVQMLEGDDGKLIMPPNPFGSTHATRTRAVNGVRRLQPELSVISEIESS	610

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju04g1110	610	Gene3D	Transferase(Phosphotransferase) domain 1	370	573	-	-
	Alju04g1110	610	FunFam	serine/threonine-protein kinase PBS1-like	269	369	-	-
	Alju04g1110	610	SUPERFAMILY	Protein kinase-like (PK-like)	280	567	IPR011009	-
	Alju04g1110	610	ProSiteProfiles	Protein kinase domain profile.	295	581	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju04g1110	610	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	416	428	IPR008271	GO:0004672\|GO:0006468
	Alju04g1110	610	SMART	serkin_6	295	566	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju04g1110	610	Gene3D	Phosphorylase Kinase; domain 1	271	369	-	-
	Alju04g1110	610	Pfam	Wall-associated receptor kinase galacturonan-binding	29	97	IPR025287	GO:0030247
	Alju04g1110	610	ProSitePatterns	Protein kinases ATP-binding region signature.	301	323	IPR017441	GO:0005524
	Alju04g1110	610	Pfam	Protein kinase domain	298	564	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju04g1110	610	FunFam	PR5-like receptor kinase	370	577	-	-
	Alju04g1110	610	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	269	584	IPR045874	GO:0004672

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju04g1110	Alju-ChrAlju04	18861039	18863054	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju04g1110	199	579	Receptor kinase-like Gene Family	AT1G66910	43.276	1.35e-104	328

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Alju04g1110		Pkinase	4.1e-48	CL0016