Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1015 ATGGGAATATCAATCGCAGCTAATACAAATATCAAGCACAGAAAGAAATCATCATCCAGAGGCCACCACCGCTTCGTCGGCGTCCGCCAACGGCCGTCGGGTCGGTGGGTCGCTGAGATCAAAGATTCCCTTCAGAAAGTCCGGCTTTGGCTCGGAACATTCGACACCGCCGAGGACGCGGCCCGAGCCTACGATGCAGCCGCACGCGCTCTGCGTGGCGCCAACGCTCGCACCAACTTCGACTTGCCGGATCCCACCGCCTCTGGCAATGGCGGCACCGCCACCCAGCACGGCAGCGGCAGTTTCAGCTACATGCCGGAGAATCTCGAGCCCTTCTCGTTCGAGGACACGTGCGTGGGATCGGATCATCATGACCTTCTTGGAGCACTCAAGGCCAAGTTGTTTGATGACAAAGGTGAAGTGAAGAAGCTTCCTTCTCAATTATCAAATAACAGTCAAATCTTGGCGGGATTTGTAAACCCTAATAATAAGAATCCTGGGTTTGCAAGCACGTCTTCATCAAGCACAAGCAATAGTGCTAAGAGCAGTCACACTAATAATAATAACAACAACAATAGTAATATGCTCATTTCAGATCAAGATTATGGAGGTTCTACTATAGCAGCTGCAAAAAATAATTCTGTAGTGCCCTTTATGACGTCATCGTGGTCCAATAACAACTACGAGATAGGTAATAACTATGAATTGCCTTGGCCTACAGGTCCTACTACCCAGATGATGAACCAGGTTCCTGAAAATAATACTCCAATATGGCCATCACTACCTACAGGGGTTAATGTTATAGATGATCAGTGTACGATGGATATGATGTATTCAGATGTCAACCTTATTAACATCGAGCAGAAAAGAGAACATGATTCTGCTGATAGATCAGTTGTCTTAGGATACTCTGATTGTAATAGTAATGACCAAAATATGATCATGTATTCGGATAATCATGGGGCTTCAAATATAAGGAGTGATATTGCTCAAATTGGAGGACTAACTCAAGGGTTTTGGCCAACAGACCAGCAGCAGAAGGTTCTTGAGCAAAGTGACAATAATGGTGGTTGGTTTAGTTCTAATAATATTAATGGTACGTGGGATCCTTTGCTTTTTGTGTCGTCTGAATTAGGTTGA 1140 0.4544 MGISIAANTNIKHRKKSSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDAAARALRGANARTNFDLPDPTASGNGGTATQHGSGSFSYMPENLEPFSFEDTCVGSDHHDLLGALKAKLFDDKGEVKKLPSQLSNNSQILAGFVNPNNKNPGFASTSSSSTSNSAKSSHTNNNNNNNSNMLISDQDYGGSTIAAAKNNSVVPFMTSSWSNNNYEIGNNYELPWPTGPTTQMMNQVPENNTPIWPSLPTGVNVIDDQCTMDMMYSDVNLINIEQKREHDSADRSVVLGYSDCNSNDQNMIMYSDNHGASNIRSDIAQIGGLTQGFWPTDQQQKVLEQSDNNGGWFSSNNINGTWDPLLFVSSELG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1015 379 MobiDBLite consensus disorder prediction 13 27 - -
Alju04g1015 379 MobiDBLite consensus disorder prediction 79 104 - -
Alju04g1015 379 MobiDBLite consensus disorder prediction 1 27 - -
Alju04g1015 379 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Alju04g1015 379 SUPERFAMILY DNA-binding domain 25 81 IPR016177 GO:0003677
Alju04g1015 379 CDD AP2 24 81 IPR001471 GO:0003700|GO:0006355
Alju04g1015 379 FunFam ethylene-responsive transcription factor RAP2-11 23 82 - -
Alju04g1015 379 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Alju04g1015 379 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Alju04g1015 379 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 221 - -
Alju04g1015 379 MobiDBLite consensus disorder prediction 156 197 - -
Alju04g1015 379 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Alju04g1015 379 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Alju04g1015 379 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Alju04g1015 379 MobiDBLite consensus disorder prediction 81 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1015 Alju-ChrAlju04 15504665 15505804 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1015 9 80 AP2-EREBP Transcription Factor Family AT5G19790 67.123 1.92e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju04g1015 AP2 1.2e-13 CL0081