Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1003 ATGACAAGGGCTGTGCGCAGTAGGATTCTCAAGGATGCGAATGGTGGTGATATTAGTGATCATCTACGCAACCACATCCATTTAACAAATTGCATTCACTTGAAGAACCATATGCACAAGAACAGCCCCATTCTTGCTGATAGGTCGCTTATGAGGGACCTAGTTGTGCTGCAGAGGTCACGCTCTCTGAGAGACCCTTCAGCAAGTCCTCCTTCATGGCATTCTCCTTCTATAATTGAGGTTCTTTCTAAGAGGGTTGACAATGATGCAGTGGTTCAGGAGGGAAGAAGGTCTGTAGGAATTGAACGCCGGAAAGAAGGAAGGCGATTGTCTGGAACCTCACCACCTGTTGTTAGTTTAGGTCTATCGAAAGTTGCTCCGGGTGAGGAGAGCCGGGGTTATGATGGAGGAGGGTCGGCGAGTAGAGACCGGAGTAGCAGGAGTGGAATTGGGGATGGACGGAAAGTTGGAAGAGAAGAGTCTGGTAGGAAGAGTGACAGGCCTGATTATATGGGGATCAGTGAAGAGCAACTTCACAGTCAACTTGGCAGAGATATGGCCGAAGATGTTGTTTCAAGGCAATCTGAATCGAAAGAGAGAAAGAGCAAACAAAGGGGGAAGCATGTTCAAGATGTTCTAGCAAAGACCCTTTCTGAGCAGCTGAATGATGTTCCACTGGATAGTGATGATTTGGCATCTTCAAACAATAATGTCCACAGAAGGTTTCCTAGGCAGCAGAAAATTATTGAGGTGCCAGAAGCCAGCACACGTGGTCATGGAAATGGAGTGAATAGGGGGAAAAGGCGTAAATTTCGAAGTGCAAGAAGAGCTCGGGCTTCTGTGGCATCTAAAGATACTGGAGCTGAAAATGAACTGTCTGTTGCTTCTAACTCATTTGCTCATGGTTCAGCCCACCATAAATATCACATGGAAGAGGCAGATGAGTATGGAGAAGAAAATGTCACCAGGGCACCCAAAAATGGGTGCGGCATTCCTTGGAATTGGTCAAGAATTCATCACAGAGGTAAAACATTCCTTGACATGGCTGGACGAAGCTTTTCTTGTGGTTTATCTGACTCAAGACTAAAGAAAGGGGCACTGGATGCCAATGGAAGAAATATTTCTGACATGCCTGTGGCTTCTGATCAATCAAGCTCATTTACCAGGTCTGAAGGAGAGGCACTGCCGCTACTAGTTGAGGCCTCTGGATCTCAGGGAAGTACTGAGAATGCTTGTTGGGGGCATGACTATTCTGGGGAGCTTGGTATTTTTGCTGATAATTTATTGAAGCGTGACATTGATTCTGACCTCGCTTCTGAAGCTAGATCTGGGGATCAGCATAAGATGAGAGGGAATCGCCATGGCAGGCATCAAAGCTTAACACAAAAATTTCAGCCACGAACCTTCAGAGATTTAGTTGGGCAGAATTTGGTGTCACAAGCTCTTTCAAATGCAGTCATGAGAAGAAAAATTGGATTTCTGTATGTGTTTTATGGACCCCATGGCACTGGAAAAACTTCCTGTGCTCGGATATTTGCTAGAGCTTTAAATTGTCATTCTTCTGAACACCCAAAACCATGTGGCTTTTGCAATTCTTGTGTAGCACATGATATGGGCAAGAACAGAAGTATAAGGGAAGTTGGTCCAGTCAGTAATTTTGACTTTGAGAGCATCATGGATCTACTTGACAACATGATTGTTTCCCAGGTCGCATCACAATACAGAGTGTTTATTTTTGATGATTGTGATACTCTGTCAGCTGAATGCTGGAGTGCCATATCGAAGGTCATTGATCGAGCTCCTAGACGTGTGGTTTTTATACTTGTTAGTTCATCTCTTGATGGATTGCCTCATATAATCATATCCAGGTGTCAGAAATTTTTCTTCCCGAAGATGAAGGATTCAGACATTATGTATACATTACAGAGGATTGCAACCAAAGAGGGTCTAGAAATTGATCGGGATGCCTTGAAACTTATTGTATCAAGATCAGATGGATCATTGAGAGATGCTGAGATGACCCTTGAGCAACTTAGTTTGCTTGGGCAGAGAATATCAGTTCCTCTAGTCCAGGAATTAGTGGGGCTTATCTCTGATGAGAAGTTGGTTGATCTGCTTGATTTGGCACTATCCGCAGACACAGTCAACACTGTGAAGAACTTGCGAGTGATAATGGAAACTGGTGTTGAGCCGTTAGCCTTAATGTCACAGCTTGCTACTGTAATTACTGACATACTCGCTGGGACCTATGATTTCACAAGAGAAAGGAGAAGGAAGTTTTTCCGGAGACATCCATTATTGAAAGAAGATATGGAAAAGCTACGCCAAGCTTTAAAAACATTATCCGAGGCTGAGAAGCAGTTGAGGATGTCCAATGACAAACTAACCTGGCTGACAGCTGCGTTGCTTCAACTCGCTCCTGACCAGCAATATATGCTGCCTACATCATCTGATAACAGTTTCAATCATAGTCCCTTGCCCCTAAATAATGCAGATGGGAGAGAAGCAGCCCGAAGAACAAGTACTAATGTTGAAATTCCTCACAAAGAGAGGCATTTAGCAACGGATTCTAGAATGAAGAATATCCATGCTGGTAGTTCTGCTGATGGTATGGCGAAGAGTCTGAACTCAGAAGATAAAATATTTGCTGTTGCCGGTATTCTGCCTGAACACATATCTTCACATGCTACTGATCTGATTAGAATGAATGATCGACAGATTCTGAGTAAAAACAGGAAAGGAATTGAAGAGATATGGTTAGAGGTGCTTGACAGAATTCAGGTTAATGGTCTAAAAGAGTTTTTATATAGCGAAGGGAAGCTGGTCTCTGTTAGTTTTGGTGCAGCTCCAACTGTGCAGTTAATGACTAGTTCTCAACAGACCAAATTTACTGCTGAGAAGTTTAGGGGGCATATTTTACAGGCATTTGAATCTGTCCTTGGATCTCCTGTAACGTTAGAAATTAGATGTGAATCAAACAGAGACGCAGGATCAGGGTCTCAACTCCCTCTTGTACTGCCTGCCACCAAAGACAGTTGTTCTGTAGAAAGGAAAGTGAGTGAAATTGTAGAAGAAGCAGCAGCTTCTCCGAAGGACCATAAGAATAAGCAGCAGGCTGACTTTAATAAAAAGCCAATTGTGACTTCACACTTAGAAAGAAGGAGGCTTAGGGAACAAGGTCAGAGCCGAAGCATTGTGAAAAGTAAGGTATCTCTTGCTCATGTAATCCAGCAGGCGGAAGGACATACACAGCGTAGTGGGTGGTCAAAACGCAAAGCAGTTTCCATTGCCGAAAAGCTTGAACAAGAGAATCTGAGATTGGAGCCAAGATCAAGGACCTTGCTATGCTGGAAAGCATCACGAGTAACGCGGCGGAAGCTTTCGCGTTTGAAAGTTAGAACCAGAAAACCTCATGCGTTGCTGAATCTGGTTTCATGTGGAAGATGTCTCAGTTCTAAATCTCCAAGGTAG 3471 0.4373 MTRAVRSRILKDANGGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSLMRDLVVLQRSRSLRDPSASPPSWHSPSIIEVLSKRVDNDAVVQEGRRSVGIERRKEGRRLSGTSPPVVSLGLSKVAPGEESRGYDGGGSASRDRSSRSGIGDGRKVGREESGRKSDRPDYMGISEEQLHSQLGRDMAEDVVSRQSESKERKSKQRGKHVQDVLAKTLSEQLNDVPLDSDDLASSNNNVHRRFPRQQKIIEVPEASTRGHGNGVNRGKRRKFRSARRARASVASKDTGAENELSVASNSFAHGSAHHKYHMEEADEYGEENVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSFSCGLSDSRLKKGALDANGRNISDMPVASDQSSSFTRSEGEALPLLVEASGSQGSTENACWGHDYSGELGIFADNLLKRDIDSDLASEARSGDQHKMRGNRHGRHQSLTQKFQPRTFRDLVGQNLVSQALSNAVMRRKIGFLYVFYGPHGTGKTSCARIFARALNCHSSEHPKPCGFCNSCVAHDMGKNRSIREVGPVSNFDFESIMDLLDNMIVSQVASQYRVFIFDDCDTLSAECWSAISKVIDRAPRRVVFILVSSSLDGLPHIIISRCQKFFFPKMKDSDIMYTLQRIATKEGLEIDRDALKLIVSRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTRERRRKFFRRHPLLKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYMLPTSSDNSFNHSPLPLNNADGREAARRTSTNVEIPHKERHLATDSRMKNIHAGSSADGMAKSLNSEDKIFAVAGILPEHISSHATDLIRMNDRQILSKNRKGIEEIWLEVLDRIQVNGLKEFLYSEGKLVSVSFGAAPTVQLMTSSQQTKFTAEKFRGHILQAFESVLGSPVTLEIRCESNRDAGSGSQLPLVLPATKDSCSVERKVSEIVEEAAASPKDHKNKQQADFNKKPIVTSHLERRRLREQGQSRSIVKSKVSLAHVIQQAEGHTQRSGWSKRKAVSIAEKLEQENLRLEPRSRTLLCWKASRVTRRKLSRLKVRTRKPHALLNLVSCGRCLSSKSPR 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1003 1156 FunFam DNA polymerase III subunit gamma/tau 633 695 - -
Alju04g1003 1156 Gene3D - 450 629 IPR027417 -
Alju04g1003 1156 FunFam DNA polymerase III subunit gamma/tau 453 631 - -
Alju04g1003 1156 NCBIfam DNA polymerase III subunit gamma/tau 458 805 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Alju04g1003 1156 Coils Coil 764 794 - -
Alju04g1003 1156 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 461 822 - -
Alju04g1003 1156 MobiDBLite consensus disorder prediction 189 210 - -
Alju04g1003 1156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 493 679 IPR027417 -
Alju04g1003 1156 MobiDBLite consensus disorder prediction 262 277 - -
Alju04g1003 1156 Pfam DNA polymerase III, delta subunit 475 632 - -
Alju04g1003 1156 CDD HLD_clamp_pol_III_gamma_tau 632 695 IPR045085 -
Alju04g1003 1156 MobiDBLite consensus disorder prediction 250 290 - -
Alju04g1003 1156 SMART AAA_5 491 633 IPR003593 GO:0016887
Alju04g1003 1156 Gene3D - 634 695 - -
Alju04g1003 1156 SUPERFAMILY post-AAA+ oligomerization domain-like 703 805 IPR008921 GO:0003677|GO:0006260
Alju04g1003 1156 MobiDBLite consensus disorder prediction 147 173 - -
Alju04g1003 1156 MobiDBLite consensus disorder prediction 97 210 - -
Alju04g1003 1156 MobiDBLite consensus disorder prediction 439 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1003 Alju-ChrAlju04 15282779 15288901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1003 458 744 Core DNA Replication Machinery Family AT1G21690 22.222 3.01e-12 67.4