Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0987 ATGGATGAAGCTCAGGTTGGCTCTGGTTCCTTGCCTCCTTTCTTGGCGAAGACGTATGAGATGGTGGAAGATCCTTCCTCGGATTCGGTAGTTTCTTGGAGCAGCACTAATAGAAGTTTTGTAGTATGGGATCCGACAGAATTTGCAAGGGATTTGTTACCAAGATTCTTTAAGCATAATAATTTCTCCAGTTTCATCAGGCAGCTGAACACTTATGGTTTTAGAAAAATTGACCCAGAACGGTGGGAATTTGCGAATGATGATTTTATAAGGGGTCAACCACATCTTTTGAAGGGTATCCATAGGCGAAAACCAGTTCATAGCCATTCTTTACAGAATCAGCAGGGACATGGAGCTTTTCCATTATCTGAATCAGAAAGGCAGAATTTCAGAGATGAAATAAGGAGGCTTAAACAAGATAAAGAAGTACTTACTTTAGATTTACAGGGATATGAACAGGAATGTCAAACTTGTGAGATACAAATACATTGCTCAAACGACAGTTTGGAAAAGTTGGAACAGAAGCAACAAGAGATAGTATCTTTTCTTTCTCAAGCTTTGCATAAACCTGGGGTTGCTTTAAATCTCTGGTCACTTTCAGAATCCCTGGATAGAAAACGAAGGTTGCCGAGAGGCAGCGGGGCCTTTTGTGATGAAGCCAGCATTGAAGATCCTATGGAGACTTCCCAAATGTCGCCTAGAGAAATTTCTATACTGACATCAAAATTGGAGCGATTGAATCGGCTGGAATCATCTCTGTTATTCTGGGAGAACATTGCAAATGATGTTGGTGATACCTTTGTTCAAAGTTCTTCAAACTTGGACTTTGATGAGTCTACAAGTTGTCCTGATAGCCCATCTATATCGTGTGTGCAACTAGATATTGAAATTCAGCCAAAGTCATCAGGAATCGACATGAATGCTGAGCCTGCTGTATCTGCTGTTCCTGAGGCTGTTACGCCGAAAGAACAAGTAGTGGAAACAACCACAGTGGCGACTGGTGTTAATGATGTCTTCTGGGAACAGTTCTTGACAGAGAATCCTGGTTCATCAGAGACACAAGAGGTGCAGATGGAAATGAAGGATTCTGATGTCAGAAAGAATGAAGGAAAGCCTATTGAAGTAAATAGATTTTGGTGGAATATGCGGAATGTAAATAATCTTCCAGAGCAGATTGGGCATCTTACTCAAGCAGAAAAAACTTAA 1206 0.4088 MDEAQVGSGSLPPFLAKTYEMVEDPSSDSVVSWSSTNRSFVVWDPTEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPERWEFANDDFIRGQPHLLKGIHRRKPVHSHSLQNQQGHGAFPLSESERQNFRDEIRRLKQDKEVLTLDLQGYEQECQTCEIQIHCSNDSLEKLEQKQQEIVSFLSQALHKPGVALNLWSLSESLDRKRRLPRGSGAFCDEASIEDPMETSQMSPREISILTSKLERLNRLESSLLFWENIANDVGDTFVQSSSNLDFDESTSCPDSPSISCVQLDIEIQPKSSGIDMNAEPAVSAVPEAVTPKEQVVETTTVATGVNDVFWEQFLTENPGSSETQEVQMEMKDSDVRKNEGKPIEVNRFWWNMRNVNNLPEQIGHLTQAEKT 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0987 401 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 225 IPR027725 -
Alju04g0987 401 Gene3D - 8 104 IPR036388 -
Alju04g0987 401 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju04g0987 401 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju04g0987 401 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju04g0987 401 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju04g0987 401 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju04g0987 401 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju04g0987 401 Coils Coil 127 154 - -
Alju04g0987 401 FunFam Heat shock transcription factor 1 7 104 - -
Alju04g0987 401 SUPERFAMILY "Winged helix" DNA-binding domain 10 103 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0987 Alju-ChrAlju04 15183953 15185284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0987 1 401 HSF AT4G18880 50.000 1.10e-116 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Alju04g0987 HSF_DNA-bind 1.2e-31 CL0123