Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0980 ATGGCTCAGGCGTCTGCAGCAAATGGAACCCACGAGGTTGTTCTGAACGTCAACGACAAATCCAATGACGATTCCGGCATCTCTGTCTCCGTCCCTTTCTTGCAGAAGGTCCGTTCTCCACCTTCTCTCTCTAAATTGGTGGCAGAATTCGCGGGAACATACTTTCTGATATTCGCCGGCCAAGCGGCGGTGATGGTGGACAAGGGCTACGATAACCAAGTAACGCATCCTGGGATTTCCATAGTTTGGGGACTTGTGGTTATGGTTCTTGTTTATTCCGTTGGTCACATCTCTGGTGCTCATTTCAATCCTGCTGTCACTCTTGGTTTTGCTTCCACCAAACGTTTCCCCCTCAAACAGGTACCAGCTTATGTATTTGTTCAGGTTCTGGCATCGACTCTGGCGAGTGGGACTCTGAGGCTTATATTTGAAGGAAGCAGAGACAACTTCGCAGGAACATTAGTGTCTGGGACATATCTTCAAGGTTTTGTGATTGAGTTCATCATCACCTTCTACCTTATGTTTGTTATATCTGGTGTGGCCACAGATAACAGAGCGATTGGTGAGCTGGCTGGTCTTGCGGTGGGGGCTACGGTGTTGCTTAATGTCATGTTTGCTGGGCCGGTGACCGGAGCTTCCATGAGCCCAGCGAGAAGTTTAGGGCCAGCGATAGTGTGGCACGAATATAAAGGAATATGGGTGTACATGACAGCGCCAGTGGCCGGAGCGGTGGCCGGAGCATGGGTTTATAACATCATAAGGCACACAGACAAGCCAGTACGGGAGATCACATAG 795 0.4981 MAQASAANGTHEVVLNVNDKSNDDSGISVSVPFLQKVRSPPSLSKLVAEFAGTYFLIFAGQAAVMVDKGYDNQVTHPGISIVWGLVVMVLVYSVGHISGAHFNPAVTLGFASTKRFPLKQVPAYVFVQVLASTLASGTLRLIFEGSRDNFAGTLVSGTYLQGFVIEFIITFYLMFVISGVATDNRAIGELAGLAVGATVLLNVMFAGPVTGASMSPARSLGPAIVWHEYKGIWVYMTAPVAGAVAGAWVYNIIRHTDKPVREIT 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0980 264 CDD MIP 45 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju04g0980 264 SUPERFAMILY Aquaporin-like 38 260 IPR023271 -
Alju04g0980 264 Pfam Major intrinsic protein 37 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju04g0980 264 PRINTS Major intrinsic protein family signature 44 63 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju04g0980 264 PRINTS Major intrinsic protein family signature 196 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju04g0980 264 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju04g0980 264 PRINTS Major intrinsic protein family signature 83 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju04g0980 264 PRINTS Major intrinsic protein family signature 120 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju04g0980 264 PRINTS Major intrinsic protein family signature 233 253 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju04g0980 264 ProSitePatterns MIP family signature. 101 109 IPR022357 -
Alju04g0980 264 PANTHER AQUAPORIN NIP2-1 22 258 IPR034294 -
Alju04g0980 264 NCBIfam MIP family channel protein 48 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Alju04g0980 264 Gene3D Glycerol uptake facilitator protein. 5 262 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0980 Alju-ChrAlju04 15040699 15042324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0980 45 264 Major Intrinsic Protein MIP AT5G37810 58.182 7.88e-89 263