Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0940 ATGCCCTTCCTGGCCTCCTCCTCCAATTATGATATTCTTTCCTTGAAAAAGCAAATCATTTCAGTAATGCTTTCTGATAGAAGAAGGAAAAGAATTTCCCAGTTGCTGAGAAACTGTGTTCCTGCTTTGTTAACTCTTTTATCGCTTTTGTTTTTCCCTTCCCCATCAGGTTTTTGTGAGGCTGATTTGAGGGCCATGGAGTTCCCAAATAATAATAATAATGATATCAAAAATCAAGCCATTTCAGATTCATCATCTCCACAGAGAAAGATGGGAAGAGGGAAGATCGAGATCAAGAGAATCGAGAACACCACAAATCGCCAGGTCACTTTCTGTAAGCGCAGAAATGGCCTCCTCAAGAAAGCTTATGAGCTCTCTGTGCTTTGTGACGCCGAGGTCGCCCTCATCGTCTTCTCCACTCGTGGTCGCCTCTATGAATATGCTAATAACAGTGTGAAGGCAACAATAGAGAGGTACAAGAAAGCATGTTCAGATTCTTCTGGTGCTGGATCCACTTCTGAAGCTAATGCTCAGTATTATCAGCAAGAAGCAGCCAAACTGCGGGCTCAAATTAGTAACCTGCGCAATAACAACAGGCAAATGATGGGGGAGACATTGGCAGGTTTGGGTGCTAGAGATCTCAAGAACTTGGAGGGCAAGTTAGAGAGAGGCATCAGCAGAATCCGTTCCAAAAAGAATGAGCTTCTGTTTGCAGAAATTGAGTACATGCAGAAGAGGGAGGTAGACTTGCACAATAACAACCAGCTTCTTCGAGCTAAGATAGCAGAGAGTGAGAGAAACCAGCAGCATAACATGAATGTGATGGCATCAAGCTATGAGAATACAAATGAGCATAATAATCAATTTGACTCAAGAGCCTTCTTCCAAGTCACTGGCTTACAACCTCACTACCCTTCCCATGACCACATCCCTCTTCAATTAGTGTGA 948 0.4325 MPFLASSSNYDILSLKKQIISVMLSDRRRKRISQLLRNCVPALLTLLSLLFFPSPSGFCEADLRAMEFPNNNNNDIKNQAISDSSSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIERYKKACSDSSGAGSTSEANAQYYQQEAAKLRAQISNLRNNNRQMMGETLAGLGARDLKNLEGKLERGISRIRSKKNELLFAEIEYMQKREVDLHNNNQLLRAKIAESERNQQHNMNVMASSYENTNEHNNQFDSRAFFQVTGLQPHYPSHDHIPLQLV 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0940 315 Coils Coil 177 204 - -
Alju04g0940 315 ProSiteProfiles MADS-box domain profile. 91 151 IPR002100 GO:0003677|GO:0046983
Alju04g0940 315 Pfam K-box region 173 261 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g0940 315 Coils Coil 214 234 - -
Alju04g0940 315 Gene3D - 103 169 IPR036879 GO:0003677|GO:0046983
Alju04g0940 315 SUPERFAMILY SRF-like 92 163 IPR036879 GO:0003677|GO:0046983
Alju04g0940 315 FunFam agamous-like MADS-box protein AGL11 103 186 - -
Alju04g0940 315 MobiDBLite consensus disorder prediction 74 93 - -
Alju04g0940 315 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 100 147 IPR002100 GO:0003677|GO:0046983
Alju04g0940 315 PANTHER SERUM RESPONSE FACTOR HOMOLOG 91 271 - -
Alju04g0940 315 SMART madsneu2 91 150 IPR002100 GO:0003677|GO:0046983
Alju04g0940 315 MobiDBLite consensus disorder prediction 74 89 - -
Alju04g0940 315 CDD MADS_MEF2_like 92 166 IPR033896 GO:0000977|GO:0045944
Alju04g0940 315 ProSiteProfiles K-box domain profile. 177 267 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g0940 315 ProSitePatterns MADS-box domain signature. 93 147 IPR002100 GO:0003677|GO:0046983
Alju04g0940 315 PRINTS MADS domain signature 128 149 IPR002100 GO:0003677|GO:0046983
Alju04g0940 315 PRINTS MADS domain signature 113 128 IPR002100 GO:0003677|GO:0046983
Alju04g0940 315 PRINTS MADS domain signature 93 113 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0940 Alju-ChrAlju04 13573195 13580447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0940 82 315 MADS-box Gene Family AT3G58780 62.397 2.54e-100 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju04g0940 K-box 1.9e-26 No_clan