Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0852 ATGGGAAGAGGAAGATTGGCGATGAAATTGATAGAGAAAGAGAAATCGAGAAAGGCAACGTTTCAGAAGAGAAAGAATGGAATTATGAAGAAAGCTCATGAGCTTTCTACACTTTGTGGAGTTGATTGTTGCTTGATCGTTTATAGCCCTAACTCCATTAACGACCTTCCTGAGATTTGGCCTCGAGATCGCATAGAGGTGCGTAGAATCATTGAGAAGTACAAGGCAAAGATAGCTGAGAAAAGTCCCAAGAAGTACAATGTGACGGAGTTCTTCAAGGACAGGAAGAACAAGGTGGAAACCGAAGCGTGCAAGCTCCGGCAAGAGAGGCTCCGGAAACTCTATCCGACGTGGGACTTCAATTTCGACAAACTCGGTGAAGAACAGCTGAGGATGTTTGTTGCCCTCTTGGATTCCAAAATCGAAGTTTGTAAAGAGAGGATCAACATGTTGAAGAAGAAACGTTACATAGAGGAAAAACAACAACAACAAATAGCTGAATCATCCTTAGACAAATCATCATCTTCAGCTTCAAACCGAAGCCACCTCAGTTTCATTCACAACAACAACCACAACAACAACGGCAGTACTACTACGTTGTCAGCTCATCATCATCGAACCCTAGATTTCCCTCTCAAGTCTGAGGACAATAATCTTCATCATCGTCTGATGCTTCAACCCTTTAACCCAAATCTGATGCCATTGACGATGATCACACCGAATGATTCTGCAGATACAACACAGAATGATGCTGCCTTTGGTCATTATGATCTGATGGTGAGAGAATCTTACTGTCCACCTTCTTCATGGTGCTACAGTAGTAGTAATAATAACAATAACAATAATTACTATACTAATTATCTGCAGAATAGTAATAATAATATTCTGCAGATTCATCCTCACGAAGCAAATTTGCAGGTGAATGATAATATTCCAGCTGCTCCTCTAATGATGCAAGAATTTCAGAGCTATCATCACTATGGGTATAATCAACATGATCTGCTTCAAGTTCATCATCAGAAGTTCAACTATATGGACCAAAAGAAGTAA 1050 0.4029 MGRGRLAMKLIEKEKSRKATFQKRKNGIMKKAHELSTLCGVDCCLIVYSPNSINDLPEIWPRDRIEVRRIIEKYKAKIAEKSPKKYNVTEFFKDRKNKVETEACKLRQERLRKLYPTWDFNFDKLGEEQLRMFVALLDSKIEVCKERINMLKKKRYIEEKQQQQIAESSLDKSSSSASNRSHLSFIHNNNHNNNGSTTTLSAHHHRTLDFPLKSEDNNLHHRLMLQPFNPNLMPLTMITPNDSADTTQNDAAFGHYDLMVRESYCPPSSWCYSSSNNNNNNNYYTNYLQNSNNNILQIHPHEANLQVNDNIPAAPLMMQEFQSYHHYGYNQHDLLQVHHQKFNYMDQKK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0852 349 CDD MADS 2 61 - -
Alju04g0852 349 MobiDBLite consensus disorder prediction 166 202 - -
Alju04g0852 349 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Alju04g0852 349 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju04g0852 349 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju04g0852 349 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 188 - -
Alju04g0852 349 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Alju04g0852 349 SUPERFAMILY SRF-like 1 78 IPR036879 GO:0003677|GO:0046983
Alju04g0852 349 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Alju04g0852 349 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0852 Alju-ChrAlju04 10346614 10348460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0852 6 141 Type I MADS-box Gene Family AT5G58890 41.549 2.16e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju04g0852 SRF-TF 2.8e-20 No_clan