Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0677 ATGGATGACCTCTTCACCGTCGACGATTTCCCTTACCACGTGGCCCCATTTCCCGACCCCTCTGACCTCATTTACCCCCACCCCACGCCGGCTGTTCACCATCCCGACGTCGCCGACCGCCGCGGGCTTCTTAACCCCCCTCCACAGAAGCTCCGGCCTATTAGGAGCCTTGACCGGTCTTCTTCGCCGCCGTCGCTGGTCGCCGAGATTCCTGAGAATGGAGGGCTCGCCGGAGCGTCTAACGATGTGGGTTACCTTTGTCATCAGTCAAGTCAGGATCTTGAGTTTCTGGATCAGCGAGTTGAGTCTTGTGAGGAGCTGAGGAAGGAAGCTTCCGATGGTGTTGCCGGAAATGATTGCCTTCAGACGGAGGTTCCAGCGGGGCTCGGGCCGTCTCATACTTGTGACCCGAACGCTAATGGGTTTAAGCCGAATCAGGAATCTGGTTCATGTGGGGCCAACGATGATGACGATTCATCTGAAAGTGTGGAAGAACCTGGGAGTGGAAAGAAAAGAGTAAAGGCGATTACAAAGTTTGAAGCTTTTCTGGAAAATTTGGCGATGAAGGTGATGGAAAAGCAAGAGCAGATGCATAAGCAACTGCTGGATATGGTGGAAAAGAAAGAAAGGGAAAGAGCCATGAGAGAAGAGGCTTGGAAGCAAAAGGAAATGGAAAGAATCAAACAACATGAGGAGGCCAGAGCTCAAGAAAAATCTAACAACCTGGCTCTGATATCATTAATTCAGAATCTATTGGGCCATGAAATTCAAATCCCCCAACCGGCAGCAACCAGCTCAAGAGAGGAGGAGGAAGGCGAAGCGAACATCCAGAAAGATTTGAAGAGTGATCAGAGTAACAATAGATGGCCTGAAGCTGAAGTACAAGCTCTTATAACACTAAGAGCTTCTTCAGAACACAGATTTCAAGGGATGGGATCCAAAGTATCTCTATGGGAGGAGATATCTAAAGCTATGCATAATATGGGTTACAATCGTTCCGCGAAGAAGTGCAAGGAGAAATGGGAAAACATCAACAAGTATTATAAGAGATCATCGGAGAGTAGGAAGAAGCGACGGCTAAATAGTAAAGCTTGCCCATACTTTGATGAGTTGGACATTCTGTACCGAAACCGGCTCCCAAATATTGGGAATGCCCTTAGTGACACCTCAATGTCATCAAAGACTGAAAAGGAATAA 1197 0.482 MDDLFTVDDFPYHVAPFPDPSDLIYPHPTPAVHHPDVADRRGLLNPPPQKLRPIRSLDRSSSPPSLVAEIPENGGLAGASNDVGYLCHQSSQDLEFLDQRVESCEELRKEASDGVAGNDCLQTEVPAGLGPSHTCDPNANGFKPNQESGSCGANDDDDSSESVEEPGSGKKRVKAITKFEAFLENLAMKVMEKQEQMHKQLLDMVEKKERERAMREEAWKQKEMERIKQHEEARAQEKSNNLALISLIQNLLGHEIQIPQPAATSSREEEEGEANIQKDLKSDQSNNRWPEAEVQALITLRASSEHRFQGMGSKVSLWEEISKAMHNMGYNRSAKKCKEKWENINKYYKRSSESRKKRRLNSKACPYFDELDILYRNRLPNIGNALSDTSMSSKTEKE 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0677 398 MobiDBLite consensus disorder prediction 25 83 - -
Alju04g0677 398 Gene3D - 289 350 - -
Alju04g0677 398 CDD GT1 287 351 - -
Alju04g0677 398 Coils Coil 191 211 - -
Alju04g0677 398 MobiDBLite consensus disorder prediction 260 288 - -
Alju04g0677 398 SMART sant 285 347 IPR001005 -
Alju04g0677 398 PANTHER FI21293P1 138 387 - -
Alju04g0677 398 FunFam Trihelix transcription factor GT-2 289 350 - -
Alju04g0677 398 ProSiteProfiles Myb-like domain profile. 281 345 IPR001005 -
Alju04g0677 398 Pfam Myb/SANT-like DNA-binding domain 287 372 IPR044822 -
Alju04g0677 398 SUPERFAMILY Homeodomain-like 286 364 IPR009057 -
Alju04g0677 398 MobiDBLite consensus disorder prediction 106 171 - -
Alju04g0677 398 Coils Coil 220 240 - -
Alju04g0677 398 MobiDBLite consensus disorder prediction 138 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0677 Alju-ChrAlju04 7085128 7087161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0677 168 377 Trihelix Transcription Factor Family AT5G47660 43.363 5.73e-49 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Alju04g0677 Myb_DNA-bind_4 1e-21 CL0123