Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0662 ATGTTATTAGACGTGGAAGTGATGGGAAACAAGAAGAGGAAGAGATGTGGGAGGGTTTTTAGATTCAAGAACTTTGGTGAGGCTGGATATCCTGTGGAGTTTAAAGGGCCATTTCGTGAGAACGTGAATGCTTTGCTTGAGTTTGCAAATTGTGAGTCTAAATACTTAGGCTTTGGAATGCCCATTTGGTCTTTCCAACTTGAGGTTCATCGACACCCTCCTTCTCATGTCTTCTTGTTTGTCATTGAAGAAGCAATCACTGACACATCTTTGAACCGCCATTGCAAGCATTGTCAATATGTAGGATGGGGGAATCATTTCATATGCAATAAGAAGTATCACTTTGTGTTGCCATCAAAGGAGACATTGGCTGCGAGTCTGAGCTGTGAAGTGGCGTGTGAAGTAATTACTACTGGGTCAGCCATGAGTAGCAGCAGCAACAACAATAATGGTAAGTCCAAATTAATAGAATTAGAGGGCCATATGATGCAAGCTGTTTTTCACTCTAATGGATTCGGACATTTGCTCTCTGTCAATGGCCTCGAAACCGGGTCGGATCTTTCCGGACACCAGATCATGGACTTCTGGGATCGTTTGTGCACCGGATTGCAAGCAAGGAAAGTGAGCTTGAATGACGTGTCACAGAAAAAGGGCATGGAACTAAAACTTATAAATGGAATAGCATATGGTGAGGCATGGTTTGGAAGGTGGGGCTACAAATTTGGAAGAGGATGCTTTGGAGTGACTCAATCTACATACCAAAAGGCCATTGAAGCCATAAGAAGCATCCCACTTTACCTTCTAAACCACCAAATTGCTGACATACCAATCATCTTCTCAAGGTACCAAAAACTTTCTGATCATCAAACCCTAATCACACTTGGTGACCTGTTCCACTTCATGTTAGAGCTCAAATCTCACCTCCCTCGTCGGGAAAACTACTACTCTGATCATAACATCACCGCCGGAGGCTTCTCCATTGAAGCCAATAATTGCCGTTGGTCCCCGAAGAGGATAGAAATGGCAACTAGGGTTATTGTTGAAGCCTTGAAAAGAGCCGAGTTCAGATGGATTTCAAGGCAAGAGGTTAGGGATGCTGCAAGAACCTACATTGGAGACACTGGTTTGCTAGATTTTGTGTTGAAATCTCTTGGAAATCACGTTGTTGGAAACTTCATGGTTCGTAGAAGCTTGAATCCTGTCACAAAAGTTCTTGAATATTGCTTAGAAGACATCTCCAATATTGTTCTCCCCACTCATCAAGAAGGTAATAATAATAATAATGATAACAATAACAGAAGCATAAAGGACAGGTACAAAATCACTAGGGCTCAAGTGACAAAGGACATGTTTTATTTGTACAAGTACTTTATCCTTAAGGACCCCAAACAAGAACAAGGATCGTCATCGATTTTCTCAGCGATCCCATTGGCGGCGAGGATAATTCTTGACACGAAGTTTCTGATCAAAGACTACTTTGGAGAGCTTCTTCCTTTTCAAGATACTAATGATCATCTTGGCGTGGCCGACGGAAAACTAAGGCTTTACTGTACAGTAATACTTAGAAACTACCCAAACAAGGCGTTAATAATGCCACCCTACGAGTGTATCACACTGAGAAGTAACGCCACCATTAATGAGCTGAAGCTAGAAGTTGAGAGAAACTTCAGAGAGATATATTGGGGATTAAGGAATTTTTGTGTTGATTCGATTAAGAACTTGGAAGGTTGTGGAGGGAATGAGATGGTGTTTGGGATGGTTGAAGTGGGAAGAAAGTTGGTGGTTGAAGGATGGATTGATAATGTTAATGTTAATAATAATAATCATGGAGACAATACAAACATAGTTATAAGTAACAAAGTAGGAGAGATTTGTGAGGCCAATTATTATGGTGATAATAATGGTGGGAAGGTTGTGGAATGTAGTTGTGGGACTAAAGAAGACGATGGAGAGAGAATGGTGTGTTGTGATATTTGTGAGACTTGGCAGCATACGAGGTGTGTGCGAATTCCAAATGATGAACAAGTTCCTTCTATATTTCTCTGCAAAACATGTGAACAAGAAATTGTTATGTTCTCTTCCTTGCCATAG 2091 0.4113 MLLDVEVMGNKKRKRCGRVFRFKNFGEAGYPVEFKGPFRENVNALLEFANCESKYLGFGMPIWSFQLEVHRHPPSHVFLFVIEEAITDTSLNRHCKHCQYVGWGNHFICNKKYHFVLPSKETLAASLSCEVACEVITTGSAMSSSSNNNNGKSKLIELEGHMMQAVFHSNGFGHLLSVNGLETGSDLSGHQIMDFWDRLCTGLQARKVSLNDVSQKKGMELKLINGIAYGEAWFGRWGYKFGRGCFGVTQSTYQKAIEAIRSIPLYLLNHQIADIPIIFSRYQKLSDHQTLITLGDLFHFMLELKSHLPRRENYYSDHNITAGGFSIEANNCRWSPKRIEMATRVIVEALKRAEFRWISRQEVRDAARTYIGDTGLLDFVLKSLGNHVVGNFMVRRSLNPVTKVLEYCLEDISNIVLPTHQEGNNNNNDNNNRSIKDRYKITRAQVTKDMFYLYKYFILKDPKQEQGSSSIFSAIPLAARIILDTKFLIKDYFGELLPFQDTNDHLGVADGKLRLYCTVILRNYPNKALIMPPYECITLRSNATINELKLEVERNFREIYWGLRNFCVDSIKNLEGCGGNEMVFGMVEVGRKLVVEGWIDNVNVNNNNHGDNTNIVISNKVGEICEANYYGDNNGGKVVECSCGTKEDDGERMVCCDICETWQHTRCVRIPNDEQVPSIFLCKTCEQEIVMFSSLP 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0662 696 Pfam PHD-finger 641 687 IPR019787 -
Alju04g0662 696 CDD PHD_MMD1_like 640 685 - -
Alju04g0662 696 ProSitePatterns Zinc finger PHD-type signature. 641 685 IPR019786 -
Alju04g0662 696 SUPERFAMILY FYVE/PHD zinc finger 635 688 IPR011011 -
Alju04g0662 696 SMART PHD_3 640 686 IPR001965 -
Alju04g0662 696 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 690 - -
Alju04g0662 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 690 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0662 Alju-ChrAlju04 6918376 6921791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0662 11 696 PHD Transcription Factor Family AT5G22260 51.631 0.0 662
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju04g0662 PHD 1.3e-08 CL0390