Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0637 ATGATTGTTTCTCAGCTGACAATGGGAATGGACCCTGGCAAGCTCTTCATTGGTGGAATTTCATGGGACACAAATGAAGAACGACTCAGACAGTACTTTCAGAATTTTGGAGATGTGGTGGAAGCAGTGATTATGAAGGATCGGACCACAGGGCGTGCTCGTGGTTTTGGATTTATTGTTTTCTCTGATCCTTCTGTTGCTGAACAAGTTGTTATGGAAAAGCATGTCATAGATGGTAGAACTGTTGAAGCAAAAAAGGCTGTCCCTAGGGATGATCAAAACATCTCTAACAGAAGCAACAGCAGCATTCATGGATCACCTGGTCCAACCCGCACGAAGAAGATATTTGTTGGAGGTCTTGCGTCCACAGTTACTGAGAGTGACTTCAAGAAGTACTTTGATCAATTTGGAACAATTACAGATGTAGTTGTGATGTATGACCATAACACTCAAAGACCAAGAGGTTTTGGATTCATCACCTATGACTCTGAGGAAGCAGTGGATAAGGTTCTGTATAAAACATTCCATGAACTGAACGGTAAGATGGTTGAGGTTAAGCGGGCTGTTCCGAAGGAATTATCCCCAGGTCCAAGTAGAGGCCAATTAGCTGGATATAATAACTATGGTTTAAATAGAGTTAGTGGCTTTTCTAATGGTTTCATTCAGGGATATAATCCTAGCTTGGTTGGGGGGCATGGACTTAGAGCAGACGGCAGATTTAGTCCTGTTTCTGTTGGTCGAAATGGATATCCTCCATTAAGTCCCAGTTATGGGTCAGGATTCAATCTTGAACCAGCATTTGGCCAAAATGCAAATTCAAACTTAACTTCTTCCCTTATGGTAGGACGAGCCTTGAACCCTTCATACAATGGAAATTCAAGCAGGTACCATAATGTCATGGGGTACACTGGGACAAGTGTAGGAAACAACTCAACAAACCAGAATTTGTGGGGGAATGAGAGTATTAGCTTCGCTAATAATCCTACGAATTCCAATGGTTTTCACGGGTATGGAAGTCAGAATTCAGGCATGGGTTCTTTTGGTAACATTGGAACACTATGGAGCTCCTCCCCTAGTGCTGATCAAGCCGGAACTGTTGGCTCTGGCTATGGTAAGGGCACTCTTAACTATGGCCCTGGAGATGTTAACTTTAGGTCAAAAGCTGTAGGATATGGAAAAGGTAGTAGTGATGCCATTGCTGAATCAGTGTCATCATATGCTCTATCCAATGGAAGTTTCGATGGGGCGTATAAAGACATCTACGAAGCTGGGTCATTTTTTGGTGACCACACCTGGAGATCGTCACCTTCAGAGCTAGAAGATACTGGTTCTCTTGGTTATGACCTTGGAACTGCTGTTTCAGATTTGATAAGCAAAAACTCTGGTGGCCACATTGGGGCTTATGCTGTTGCCAATAGACAATCAAATAGAGGAATTGCTGCATAG 1446 0.4302 MIVSQLTMGMDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFIVFSDPSVAEQVVMEKHVIDGRTVEAKKAVPRDDQNISNRSNSSIHGSPGPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNGKMVEVKRAVPKELSPGPSRGQLAGYNNYGLNRVSGFSNGFIQGYNPSLVGGHGLRADGRFSPVSVGRNGYPPLSPSYGSGFNLEPAFGQNANSNLTSSLMVGRALNPSYNGNSSRYHNVMGYTGTSVGNNSTNQNLWGNESISFANNPTNSNGFHGYGSQNSGMGSFGNIGTLWSSSPSADQAGTVGSGYGKGTLNYGPGDVNFRSKAVGYGKGSSDAIAESVSSYALSNGSFDGAYKDIYEAGSFFGDHTWRSSPSELEDTGSLGYDLGTAVSDLISKNSGGHIGAYAVANRQSNRGIAA 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0637 481 Gene3D - 12 95 IPR012677 -
Alju04g0637 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 173 IPR000504 GO:0003723
Alju04g0637 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 81 IPR000504 GO:0003723
Alju04g0637 481 FunFam Heterogeneous nuclear ribonucleoprotein 1 110 197 - -
Alju04g0637 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Alju04g0637 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 89 IPR000504 GO:0003723
Alju04g0637 481 MobiDBLite consensus disorder prediction 87 109 - -
Alju04g0637 481 SUPERFAMILY RNA-binding domain, RBD 107 216 IPR035979 GO:0003676
Alju04g0637 481 MobiDBLite consensus disorder prediction 93 108 - -
Alju04g0637 481 SMART rrm1_1 114 186 IPR000504 GO:0003723
Alju04g0637 481 SMART rrm1_1 14 85 IPR000504 GO:0003723
Alju04g0637 481 Gene3D - 110 196 IPR012677 -
Alju04g0637 481 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 10 477 - -
Alju04g0637 481 FunFam Heterogeneous nuclear ribonucleoprotein 1 12 94 - -
Alju04g0637 481 CDD RRM2_Hrp1p 114 191 - -
Alju04g0637 481 SUPERFAMILY RNA-binding domain, RBD 11 108 IPR035979 GO:0003676
Alju04g0637 481 CDD RRM1_hnRNPA_hnRNPD_like 15 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0637 Alju-ChrAlju04 6667323 6670369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0637 15 192 Eukaryotic Initiation Factors Gene Family AT2G36660 30.688 4.04e-15 75.9