Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju04g0585 | ATGAGTCAACTCGGGGTAATGTTGCAGGAATCTCTTCAGAGAGACCGAGAGGAAAGAACGATTCTGGGATTGTTAACGGAGCAAATGGATTCTGTGAATAGGGATAATCATAGTGATAGAGAGCCTCGGAGGAGACGCAGTTTAAAAGAACGGTTAAGATTCACCGGTATGGGATGTTGTGGGGCCACCTGGGGTTTCCGTGCGACGTCAGTACGGCACGATGAAGGAGGAGAGGAAGAAGAAGACGACGAGCGGCGGCAGCAGCAGCAAAGGCTCCAAGAGCCGAATCCCGGTCAAAGATCGAGCTCGTCGGACCCGGATTGTTTGAGCCCGAACCCAACGGGTACGGGTATGAATCTTGCGGCGGCGTTGGCGGCGGAGCGTCAATTTCGGGGGACGCAAGAGCCGGAAACTGAGAGGCAAGTAGCCGCCGGCGGGAACAATTTCCGGCGGGGAGGAGTAGGAGAAGCGCCGGGGACACCGTGGAGGGTGTCGCTGATGAGGCTGCTAGAGGAGGGTGAGGGAGGCGACGCGGAGACGACGGTAACGGTGACGGTGACGGAGAAGGAGAACGGAGGAGGAATGGGGAATGATACGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGAGCGGCATTTATCCCATGTGGGCATACTTTTTGCAGAGTGTGCTCCAGAGAGCTGTGGCTGAATCGAGGGACCTGTCCCCTCTGTAACCGTTCGATCCTCGAGATTCTCGACATCTTCTGA | 750 | 0.564 | MSQLGVMLQESLQRDREERTILGLLTEQMDSVNRDNHSDREPRRRRSLKERLRFTGMGCCGATWGFRATSVRHDEGGEEEEDDERRQQQQRLQEPNPGQRSSSSDPDCLSPNPTGTGMNLAAALAAERQFRGTQEPETERQVAAGGNNFRRGGVGEAPGTPWRVSLMRLLEEGEGGDAETTVTVTVTEKENGGGMGNDTVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGTCPLCNRSILEILDIF | 249 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju04g0585 | 249 | MobiDBLite | consensus disorder prediction | 91 | 117 | - | - | |
| Alju04g0585 | 249 | ProSiteProfiles | Zinc finger RING-type profile. | 201 | 239 | IPR001841 | - | |
| Alju04g0585 | 249 | SMART | ring_2 | 201 | 238 | IPR001841 | - | |
| Alju04g0585 | 249 | MobiDBLite | consensus disorder prediction | 130 | 157 | - | - | |
| Alju04g0585 | 249 | Pfam | Zinc finger, C3HC4 type (RING finger) | 198 | 243 | - | - | |
| Alju04g0585 | 249 | SUPERFAMILY | RING/U-box | 196 | 246 | - | - | |
| Alju04g0585 | 249 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 195 | 248 | IPR013083 | - | |
| Alju04g0585 | 249 | PANTHER | OS01G0917900 PROTEIN | 5 | 249 | - | - | |
| Alju04g0585 | 249 | MobiDBLite | consensus disorder prediction | 73 | 117 | - | - | |
| Alju04g0585 | 249 | CDD | RING-HC | 201 | 238 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju04g0585 | Alju-ChrAlju04 | 6123062 | 6123811 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju04g0585 | 29 | 249 | C3H Transcription Factor Family | AT4G22250 | 47.162 | 3.30e-56 | 177 |