Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0573 ATGCGGCCACAAAACAACAATATTGAGAGGGAGGTGATCGGATGTTGCATCATGGACTTCGTCGACAACAACGATGGTGGTTCCTCTTCTTGTTCTTCTTTGAAAGCCAAGATCATTGCTCATCCTCACTACCCTCGCCTCCTCGCTGCTTACGTCAACTGTCAAAAGGTGGGCGCCCCGCCGGCAACGGTGGCGAGGCTAGATGAAGCATATGCGGCGGCGGCGGATATGAGCTGTAACCGAGGTGGGTCAGGCTGCGCCGGCGAAGATCCTGCGCTGGATCAGTTCATGGAGGCATATTGTGAGATGTTGACAAAGTACGAACAAGAGCTCTCAAAACCCTTTGAGGAAGCTGTGTTCTTCCTTCAAACCATCGAACGTCAATTCAAAGCTCTCACCGTTGATTCTCCGATCAACTTTGCTTGTAATGAGAAGACAGAATCATCTGAAGATGAGATGGATGATGTTGAAAACAGCCGAAGCATGGTCGATCCGCAGGCGGATGATAAGGAACTGAAGGATCGGCTTCTGCAAAAGTACAGCGGATACTTGGGCAGTCTGAAACAGGAGTTCATGAAGAAGAGGAAGAAGGGGAAGCTGCCTAAAGAAGCAAGGCAACAATTACTTGGTTGGTGGAATGGACACTATAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCACTTGCAGAATCAACAGGACTGGATCAGAAGCAAATAAACAACTGGTTCATCAATCAAAGAAAACGTCACTGGAAGCCTTCAGAAGACATGCAGTTCGTGGCGGTGGACCCAATGCATCCTCATCACTACTTCATGGACAACGTTCTGGCCTCTCCATATCCCTTGGATTTCTCTCACATCATGCCCTGA 873 0.488 MRPQNNNIEREVIGCCIMDFVDNNDGGSSSCSSLKAKIIAHPHYPRLLAAYVNCQKVGAPPATVARLDEAYAAAADMSCNRGGSGCAGEDPALDQFMEAYCEMLTKYEQELSKPFEEAVFFLQTIERQFKALTVDSPINFACNEKTESSEDEMDDVENSRSMVDPQADDKELKDRLLQKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLGWWNGHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVAVDPMHPHHYFMDNVLASPYPLDFSHIMP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0573 290 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 39 260 - -
Alju04g0573 290 FunFam Homeobox protein knotted-1-like 2 196 258 - -
Alju04g0573 290 CDD homeodomain 203 255 IPR001356 GO:0003677
Alju04g0573 290 ProSiteProfiles 'Homeobox' domain profile. 191 254 IPR001356 GO:0003677
Alju04g0573 290 Pfam ELK domain 171 192 IPR005539 GO:0003677
Alju04g0573 290 SMART HOX_1 193 258 IPR001356 GO:0003677
Alju04g0573 290 ProSitePatterns 'Homeobox' domain signature. 229 252 IPR017970 GO:0000981|GO:0006355
Alju04g0573 290 SMART KNOX1_2 32 76 IPR005540 GO:0003677|GO:0005634
Alju04g0573 290 Pfam KNOX1 domain 34 71 IPR005540 GO:0003677|GO:0005634
Alju04g0573 290 SMART KNOX2_2 83 134 IPR005541 GO:0003677|GO:0005634
Alju04g0573 290 SUPERFAMILY Homeodomain-like 193 270 IPR009057 -
Alju04g0573 290 Pfam KNOX2 domain 87 133 IPR005541 GO:0003677|GO:0005634
Alju04g0573 290 Gene3D - 189 261 - -
Alju04g0573 290 ProSiteProfiles ELK domain profile. 171 191 IPR005539 GO:0003677
Alju04g0573 290 SMART ELK_2 171 192 IPR005539 GO:0003677
Alju04g0573 290 Pfam Homeobox KN domain 211 250 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0573 Alju-ChrAlju04 5901676 5910518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0573 26 284 Homeobox Transcription Factor Family AT1G62360 70.111 4.42e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Alju04g0573 KNOX2 8.7e-21 No_clan