LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju04g0570	ATGGCCACACAACGAAAGCCAACCCTACTCGTGGTCTGTCTTCTCTTTCAGTTATGCATAATCAAAATCAAAGCCGAGTGCAGGCCCAAGCATGGCTGCGAGCTAGCTTTAGCTTCCTACTACATTATTTACGGAGAAAACACAAATCTCACTCGAATCAGCCAACTCTTCAATCAGAAAATTCCAGACATTCTCAAATTCAATCCCAATTTCCCAAACCCTAACAACACTACGACGACCCTTCCAACCCAGATTCGACTGCGCGTGCCCTTCACGTGCCCCTGCTTGAACCAAGATTTCTTAGGTCACACCTTCTCTTACACAATGCAGCTCGGCGATACCTACACGTTGATTGCTCATCAGACTTTCGCCGGTCTCACCGATGAGCAGTGGGTGAGCCGATTCAACCTTCTCGATCCTAATCAGATACCCATCGGGACTCGGGTCAATGTTACTGTTAATTGCTCCTGTGGTGATGCACACGTGTCCACCGATTACGGGCTGTTCTTGACGTATCCAATTTTGCCCGGCCAGGGGTTGGCGGAGGTTGCGGCGGAGAGTGGTGTCCCGGCCGAGTTGCTTCAGAGGTACAATCCTGAGTCCGATTTCAGCGCCGGCCAGCTGGTGTTTGTGCCGGCTAGAGATGAAAATGGAAACTATCCACCATTGAAGTTGAGGCAAGTTGTTTTATACTACTGCTTTGGCCTATCAGGTGATGATGGGGATACCACACTGCTCTATTCAAGGATTTCTGGTGGAGCTATTGCTGGTATAGTTGTTGGAATCATTTCTGGGACCTTACTCTTGGGACTACTATATTTCGGGCTATGTAGAAGAAGCAGAGTGGAAGATGCATCCCTTTTCACAAATCCACTAGCATTTGAAGGTAAGTATAATCAACTTGGACATCGTTCTGGAAGCAGCTCGGAGAAGCTATCAGAATTGGCTGGTGTTGCTTCTCCTAGATTGTCAGGTATTACAGTGGACAAGTCAGTGGAATTCTCATATGAGGAGCTTGCTGAAGCTACCAATGGCTTTAGTATGGCTAATATGATTGGACAAGGAGGCTTTGGATCTGTTTACTTTGCAAAACTTCGAAATGAGAAAGTGGCGATTAAGAAGATGGATATGCAAGCATCAAAAGAATTCCGTACTGAACTGAAGGTTCTTACCCATGTCCATCATCTAAACTTGGTACGCTTGATTGGATATTGTGTTAAGAACTCCTTATTTTTGGTCTATGAGTACATTGAGAATGGCAATCTAAGCCAACATTTACGTGGCTCAGAGAGGGAGCCATTAACATGGCCAAGTAGAGTGCAAATAGCCTTGGATGCAGCAAGAGGACTAGCATACATCCATGAGCAAACAGTTCCTGTTTACATCCATGGAGACATTAAATCTCCAAACATATTGATTGACGAAAATTTTCGAGGAAAGGTTGCAGATTTTGGTCAGACAAATTTGACAGAATTTGGAAGTTCTTCAATGCCATCACATCTTGTGGGCACTTTTGGCTATATGCCTCCAGAATATGTAAAATATGGCGACTTTTCCCTCAAAACAGATGTATATGCATTTGGAGTTGTTCTCTATGAACTCATATCCGCAAAAGAAGCTATTGTGAAGACAAAAGAGCTTGCGAATGAATCAAAGGGACTAGTTGCCTTGTTTGAAGAGGTTCTGAATCAGCAAAACCCAGAACAAGACCTTCGTCAACTTGTTGACCCCGGGCTCGGTGACAACTACCCTCTTGACTCAGTATATAAGATGTGTCAGCTAGCGAAAGCTTGCACACAGGAAAATCCACAAGTAAGGCCAAGCATGAGATCAATTGTAGTTGCGTTAATGGTACTTTCGTCTCCAAGAGAGGACTGGGATGTGGGTTCCTTCTATGCAAACTGA	1905	0.4472	MATQRKPTLLVVCLLFQLCIIKIKAECRPKHGCELALASYYIIYGENTNLTRISQLFNQKIPDILKFNPNFPNPNNTTTTLPTQIRLRVPFTCPCLNQDFLGHTFSYTMQLGDTYTLIAHQTFAGLTDEQWVSRFNLLDPNQIPIGTRVNVTVNCSCGDAHVSTDYGLFLTYPILPGQGLAEVAAESGVPAELLQRYNPESDFSAGQLVFVPARDENGNYPPLKLRQVVLYYCFGLSGDDGDTTLLYSRISGGAIAGIVVGIISGTLLLGLLYFGLCRRSRVEDASLFTNPLAFEGKYNQLGHRSGSSSEKLSELAGVASPRLSGITVDKSVEFSYEELAEATNGFSMANMIGQGGFGSVYFAKLRNEKVAIKKMDMQASKEFRTELKVLTHVHHLNLVRLIGYCVKNSLFLVYEYIENGNLSQHLRGSEREPLTWPSRVQIALDAARGLAYIHEQTVPVYIHGDIKSPNILIDENFRGKVADFGQTNLTEFGSSSMPSHLVGTFGYMPPEYVKYGDFSLKTDVYAFGVVLYELISAKEAIVKTKELANESKGLVALFEEVLNQQNPEQDLRQLVDPGLGDNYPLDSVYKMCQLAKACTQENPQVRPSMRSIVVALMVLSSPREDWDVGSFYAN	634

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju04g0570	634	FunFam	LysM receptor kinase 2	325	416	-	-
	Alju04g0570	634	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	461	473	IPR008271	GO:0004672\|GO:0006468
	Alju04g0570	634	Gene3D	Phosphorylase Kinase; domain 1	320	416	-	-
	Alju04g0570	634	ProSiteProfiles	Protein kinase domain profile.	346	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju04g0570	634	Gene3D	Transferase(Phosphotransferase) domain 1	417	622	-	-
	Alju04g0570	634	FunFam	PTI1-like tyrosine-protein kinase 3	417	630	-	-
	Alju04g0570	634	Pfam	Protein tyrosine and serine/threonine kinase	348	615	IPR001245	GO:0004672\|GO:0006468
	Alju04g0570	634	ProSitePatterns	Protein kinases ATP-binding region signature.	352	374	IPR017441	GO:0005524
	Alju04g0570	634	ProSiteProfiles	LysM domain profile.	105	151	IPR018392	-
	Alju04g0570	634	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	14	630	IPR044812	GO:0019199\|GO:0045087
	Alju04g0570	634	SMART	serkin_6	346	618	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju04g0570	634	SUPERFAMILY	Protein kinase-like (PK-like)	324	617	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju04g0570	Alju-ChrAlju04	5877284	5885494	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju04g0570	6	631	Receptor kinase-like Gene Family	AT3G21630	51.424	0.0	597

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Alju04g0570		PK_Tyr_Ser-Thr	1e-46	CL0016