Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0567 ATGGAGGTGGTTTGCCCAAACGTTTATGAAGTTTCAAGGAGGAGAAAGGTTCGAGAGAGACATAAGTATACTCCAAACTCTGAAGATAAAGAAGACATTCTATGTTGCTCAAAGAGGAGGCCTAATTCTTCATGCCAGAGAGAGGATCAACCAAAGAAATCTATTGCTTCCTCGAAAAGGAAAAGAAATTTGCAAAATGATATTTTGGTTGATGATTTGGAAGATGAAGAAGCCGCCGTGGTGGCCAAGATAAGGTCTAGGAGAAGAGCTCATAAACTGGACCCCATGGCTGATAAAATAGGCTCAGAATCAAGTGCTGAGAGTCCATCCTCGAGCACTACCACATTGCATACTTCGGATTCGAGAAACCATACTGAGGACGATTACATTGCATCCAGTAGGAGGAATATCAAAAGAGGTGGTTGGATTTGTCATCAGTGCATGAAAAAGGATAGATTAAACTATGTCCCTTGCAGTAAATGTGCAGAGAAATTGTACTGTGACAAGTGCATCAAGCAATGGTATCCTGATATGACAGTAGCAGAAATTGTAGAGTGTTGTCCATTTTGCCGTAGAAATTGCAATTGCAATGCCTGTTTGCGTTCAAGTGGGACGATTAAGACATCTATCAGGGATATCTCTGACGATGAGAAGTTTCAATATCTGCATTATTGTATCAACTTAGTTCGTCCACTTCTGAAACAAATGTGTGAAGAACAAGCTCTAGAGGAAGAGATCGAAGCTAGAATACAAGGGACATCACGCTGTGAGATTAAGATGCTGCAAACTCCATGCAGTGACGAAGAACGTGTCTATTGCAACCATTGTGCTACTTCAATTGTTGACTTTCACCGAAGCTGCCCTGAGTGTTCCTATGAACTCTGCCTCCAATGTTGCCAAGAAGTTCGCAATGGGACTATTTTGCCTCGAGCTGAGATGAGGTTTCAGTATGTGAATAAGGGTTATGATTATATGCATGGTGGTGATCCTCTGCTGGAGTCTTGTGATTCCAAGACTTCAGATGATCCTTGTATTGAGCAATCTATTGAGTGGACTGCAGAAAGCAACGGAAGTGTTTTTTGTGCCCCGGAGGAGTTTGGGGGATGTGGAAACTGCATGTTGGAGCTCAAGCATATTCTTCCACGGGGCTGGATATCTGAACTGGAAGCTAAAGCTGGTGATTTGTTGAGAAACTGCGTGACTGAACGAACTCTTCTGAAGCACAAAGCAGCAGCAGCATCAAGCTGCAACTACTCTGTGAGAAGAGCTGCTTACAGAGAAGGCAGTGGTGACAATGACATATACTGCCCTTCTTCAGGGGAGATTATAAATGAGGGGTTATCAATCTTTCAAAGGCATTGGATTAATGGTGAACCTGTTATAGTTCGTGATGTTCTTAAACAAGCAACAGGTTTGAGCTGGGAGCCCATGGTAATTTGGAGGGCTGTATGTGCGGCTTCGAATTCAAAAATCAACCCAAAAATGTCTGAAGTTAAGACCATTGATTGTCTCGCAGGTTGTGAGGTAGAAATCAGCACTCATAAGTTCTTTAAAGGTTATATGGAAGGAAGAACATATAGAAATCTCTGGCCAGAGATGCTAAAGCTAAAAGACTGGCCTCCCTCTGATAAGTTTGAAGATCTTTTACCCCGCCACTGTGATGAGTTTATTCGCTCCTTGCCATTTCAAGAATACACTGATCCTCGGGCTGGAATCCTCAATCTTGCTGTCAAGTTTCCAATGCATGTCTTGAAACCTGACATGGGTCCAAAAACATATATTGCTTATGGAATAAAAGAAGAACTTGGCAGAGGAGATTCTGTAACAAAGCTTCATTGTGACATGTCAGATGCGGTGAATATTTTGACCCATACAGCGGAAGTAAAGTTAAATGATGAGCAAAGGTTGTCTATTTCAAAGTTGAAAATAGCACATAAGGTCCAAGATGAAAAAGAGAAGTGTTGTGCTGAAATCAGTGGAAATATCTCTCCAAATGATGTGCCTAAAGGGGTCACACTTCTTGATGTCACTGCAGAAAATGAAACAAGAGAAGCAGGTGCTGCCCTTTGGGACATTTTCAGAAGAGAAGATACTGAGAAGTTAGACACATATTTAAGAAAACACTCAAGAGAGTTTAGACATACTTTTTGTTCTCCAGTTGAACGGGTTTTCCATCCCATTCATGATCAATGTTTTTATTTAACAATGGAGCACAAGAAGAAGCTGAAGGAGGAGTTCGGTATTGAACCATGGACATTTGAGCAGAAACTTGGGGAGGCTGTGTTTATTCCTGCTGGATGCCCTCACCAAGTCAGAAATCTCATGTCCTGTACAAAAGTTGCTGCGGACTTTGTGTCCCCAGAAAACCTGGATGAGTGTCTGCGTTTAACTAATCAGTTTCGGCAGCTTCCCAAGAACCACAGGGCCAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTGTATGCTGCTGACCAAATTCTCAAAGATTTTGAATCCTTGCTCAAGTGTGCTTGA 2517 0.4195 MEVVCPNVYEVSRRRKVRERHKYTPNSEDKEDILCCSKRRPNSSCQREDQPKKSIASSKRKRNLQNDILVDDLEDEEAAVVAKIRSRRRAHKLDPMADKIGSESSAESPSSSTTTLHTSDSRNHTEDDYIASSRRNIKRGGWICHQCMKKDRLNYVPCSKCAEKLYCDKCIKQWYPDMTVAEIVECCPFCRRNCNCNACLRSSGTIKTSIRDISDDEKFQYLHYCINLVRPLLKQMCEEQALEEEIEARIQGTSRCEIKMLQTPCSDEERVYCNHCATSIVDFHRSCPECSYELCLQCCQEVRNGTILPRAEMRFQYVNKGYDYMHGGDPLLESCDSKTSDDPCIEQSIEWTAESNGSVFCAPEEFGGCGNCMLELKHILPRGWISELEAKAGDLLRNCVTERTLLKHKAAAASSCNYSVRRAAYREGSGDNDIYCPSSGEIINEGLSIFQRHWINGEPVIVRDVLKQATGLSWEPMVIWRAVCAASNSKINPKMSEVKTIDCLAGCEVEISTHKFFKGYMEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYTDPRAGILNLAVKFPMHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVKLNDEQRLSISKLKIAHKVQDEKEKCCAEISGNISPNDVPKGVTLLDVTAENETREAGAALWDIFRREDTEKLDTYLRKHSREFRHTFCSPVERVFHPIHDQCFYLTMEHKKKLKEEFGIEPWTFEQKLGEAVFIPAGCPHQVRNLMSCTKVAADFVSPENLDECLRLTNQFRQLPKNHRAREDKLEIKKMIVYAADQILKDFESLLKCA 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0567 838 ProSiteProfiles Zinc finger RING-type profile. 144 191 IPR001841 -
Alju04g0567 838 CDD cupin_RmlC-like 724 773 - -
Alju04g0567 838 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 41 835 IPR045109 GO:0032454|GO:0033169
Alju04g0567 838 MobiDBLite consensus disorder prediction 91 130 - -
Alju04g0567 838 SMART cupin_9 549 801 IPR003347 -
Alju04g0567 838 MobiDBLite consensus disorder prediction 103 119 - -
Alju04g0567 838 Pfam JmjC domain, hydroxylase 681 784 IPR003347 -
Alju04g0567 838 ProSiteProfiles JmjC domain profile. 568 801 IPR003347 -
Alju04g0567 838 MobiDBLite consensus disorder prediction 40 61 - -
Alju04g0567 838 MobiDBLite consensus disorder prediction 40 56 - -
Alju04g0567 838 SUPERFAMILY Clavaminate synthase-like 448 823 - -
Alju04g0567 838 Gene3D Cupin 439 810 - -
Alju04g0567 838 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 141 210 IPR018866 -
Alju04g0567 838 FunFam Transcription factor jumonji domain-containing protein 431 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0567 Alju-ChrAlju04 5817342 5824885 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Alju04g0567 JmjC 2.8e-14 CL0029