Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0556 ATGGCCACCTTAACCCCAATAATCCTGCTCCTTTTTTCATGCTTTCTTCTTACATACTTGACTACAACCTCGAACGCAGATTCAACAGAAAATAATTACCTCAATACTACCGAGCTCAATTCAAGCTATACTCTCGTATCTAAGAATCTTATTCTCAACACCATAGATTCTTGTTGGAGATCCAACTCAAAGTGGGCATCAAATCGCCAAGCCCTAGCTGATTGTGCTGTTGGATTTGGTAAAGATGCCATTGGAGGTAAGTTTGGTGCTATATATGAGGTCAATGATGCCTCCGATGATCCTGTGAACCCTAAACCAGGGACACTTCGTTATGGTGTGATCCAAACACAGCCTCTTTGGATAATATTCGTCAAGGACATGGTTATTACCCTCGAGAACGAGCTTATAGTGAATAGCGATAAGACCATTGATGGTAGAGGAGCCACAGTGGAGATTGCTTATGGACCTTGCATTACCATTCAAGATGTTACTCACGTCATTATTCATGGGATTAGCATCCATGATTGTAAGCTAGGAAAAGTTGGGATGGTTAGGAGTAGTGAAGAGCATGTGGGGCACAGAGGAGGCTCAGATGGAGATGGCATTACCATATTTGGTTCTTCCAATATTTGGATCGATCATTGCTTCTTGGCTCGTTGTACAGATGGCCTGATTGATGTTATTCATGCCTCAACTTCTGTCACTATCTCTAACAATTACTTTACCCAGCATGACAAAGTAATGCTGCTAGGGCACAACGATGAATTTACAGCCGATAGAATAATGAAAGTGACAGTAGCCTTCAATCGCTTTGCCAGCGGCCTCGTAGAGAGAATGCCAAGGGTGAGATTTGGGTATGCGCATGTGGTGAACAACCAATATGAGGAGTGGATTATGTACGCCATTGGAGGCAGTGCCGACCCTACCATTTTAAGTGAAGGCAACTACTTCATAGCTCCAAACAACGTTGCTGCAAAACAGGTTACGAAGAGGGAAACAAGCGATAAGAGCTGGAATAAGTGGAAATGGAGGACGTACAAGGATAAATTCATGAATGGAGCGTATTTTGTTCCATCAGGATATGGAAGTTGTGCCCCTTGTTATTCAGCTTCACAATCTTTTGTAGCTGCTTCTGCCTTATTGGTCCCTCAATTAACTCTCAATGCTGGTCCTCTTCCTTGTGTTCTTGGCAAGGCTTGTTCATAA 1206 0.4303 MATLTPIILLLFSCFLLTYLTTTSNADSTENNYLNTTELNSSYTLVSKNLILNTIDSCWRSNSKWASNRQALADCAVGFGKDAIGGKFGAIYEVNDASDDPVNPKPGTLRYGVIQTQPLWIIFVKDMVITLENELIVNSDKTIDGRGATVEIAYGPCITIQDVTHVIIHGISIHDCKLGKVGMVRSSEEHVGHRGGSDGDGITIFGSSNIWIDHCFLARCTDGLIDVIHASTSVTISNNYFTQHDKVMLLGHNDEFTADRIMKVTVAFNRFASGLVERMPRVRFGYAHVVNNQYEEWIMYAIGGSADPTILSEGNYFIAPNNVAAKQVTKRETSDKSWNKWKWRTYKDKFMNGAYFVPSGYGSCAPCYSASQSFVAASALLVPQLTLNAGPLPCVLGKACS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0556 401 PRINTS Pollen allergen Amb family signature 75 92 IPR018082 -
Alju04g0556 401 PRINTS Pollen allergen Amb family signature 341 365 IPR018082 -
Alju04g0556 401 PRINTS Pollen allergen Amb family signature 134 150 IPR018082 -
Alju04g0556 401 PRINTS Pollen allergen Amb family signature 278 297 IPR018082 -
Alju04g0556 401 PRINTS Pollen allergen Amb family signature 371 394 IPR018082 -
Alju04g0556 401 PRINTS Pollen allergen Amb family signature 300 319 IPR018082 -
Alju04g0556 401 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Alju04g0556 401 PRINTS Pollen allergen Amb family signature 198 219 IPR018082 -
Alju04g0556 401 SUPERFAMILY Pectin lyase-like 53 391 IPR011050 -
Alju04g0556 401 Gene3D - 52 393 IPR012334 -
Alju04g0556 401 SMART amb_all 126 323 IPR002022 -
Alju04g0556 401 PANTHER PECTATE LYASE 18-RELATED 38 397 IPR045032 GO:0030570
Alju04g0556 401 Pfam Pectate lyase 135 317 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0556 Alju-ChrAlju04 5690084 5692483 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0556 7 400 Polysaccharide Lyase AT4G22080 65.990 0.0 535