Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0555 ATGGCCACCGCCACACCACTAATTTTCTTCCTTATAGCAATATCCTTCCTACCACTTATAGCTTCAAGCTCATCATATGCCTACACTACTCCCAAAAATCCCAAGAACCTCATCCTCGACACCATAGACTCTTGCTGGAGATCCAACTCAAACTGGGCATCAAATCGCCAAGCCCTAGCTGATTGTGCTGTTGGGTTTGGTAAGGATGCCATTGGAGGTAAGTTTGGTGCTATATATGAGGTCACTGATGCCTCCGATGACCCTGTGAACCCTAAACCAGGGACACTTCGTTATGGTGTGATCCAAACACAGCCTCTTTGGATCTTATTCGCCAAGGACATGGTTATTACCCTCAAGAACAAGCTTATAGTGAATAGCAATAAGACCATTGATTGTAGAGGAGCCAAAGTGAAGATTGCTTATGGACCTTGCATTACCATTCAAGATGTTACTCACGTTATTATTCATGGGATTAGCATCCATGATTGTAAGCCAGGAAAAGCTGGGATGGTAAGAAGCAGTAGTGATCATGTAGGACATCGTCTAGGTTCAGATGGAGACGCCATTAGCGTATTTGGTTCCTCAAATGTTTGGGTTGACCATTGTTACAAGAGGATAGTGAAGGGAAACTGGAAGAATTGGAAATGGAGGACTTCCAAAGATGCATTTGTGAATGGAGCCTATTTTGTTCCATCTGGGTATGGAAGTTGTGCCCCTTACTATTCAAGTTCTCAATCTTTTGTTGCTGCTTCAGCATTCTTGGTGCCTTCATTGACCCTTCAAGCTGGTCCTCTGAGTTGTATTGTTGGGAAAGCTTGTTAA 822 0.4355 MATATPLIFFLIAISFLPLIASSSSYAYTTPKNPKNLILDTIDSCWRSNSNWASNRQALADCAVGFGKDAIGGKFGAIYEVTDASDDPVNPKPGTLRYGVIQTQPLWILFAKDMVITLKNKLIVNSNKTIDCRGAKVKIAYGPCITIQDVTHVIIHGISIHDCKPGKAGMVRSSSDHVGHRLGSDGDAISVFGSSNVWVDHCYKRIVKGNWKNWKWRTSKDAFVNGAYFVPSGYGSCAPYYSSSQSFVAASAFLVPSLTLQAGPLSCIVGKAC 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0555 273 PRINTS Pollen allergen Amb family signature 185 206 IPR018082 -
Alju04g0555 273 PRINTS Pollen allergen Amb family signature 85 110 IPR018082 -
Alju04g0555 273 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
Alju04g0555 273 PRINTS Pollen allergen Amb family signature 62 79 IPR018082 -
Alju04g0555 273 SUPERFAMILY Pectin lyase-like 41 203 IPR011050 -
Alju04g0555 273 PANTHER PECTATE LYASE 18-RELATED 208 271 IPR045032 GO:0030570
Alju04g0555 273 Gene3D - 40 204 IPR012334 -
Alju04g0555 273 Gene3D - 205 266 IPR012334 -
Alju04g0555 273 SMART amb_all 113 259 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0555 Alju-ChrAlju04 5684655 5687834 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0555 204 273 Polysaccharide Lyase AT1G11920 57.746 2.96e-20 87.4