Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0550 ATGGCCACCGTCACACCACTAATTTTCTTCCTTATAGCAATATCCTTCCTACCACTTATAGCTTCAAGCTCATCATATGCCTACACTACTCCCAAAAATCCCAAGAACCTCATCCTCGACACCATAGACTCTTGCTGGAGATCCAACTCAAACTGGGCATCAAATCGCCAAGCCCTAGCTGATTGTGCTGTTGGGTTTGGTAAAGATGCCATTGGAGGTAAGTTTGGTGCTATATATGAGGTCACTGATGCCTCCGATGACCCTGTGAACCCTAAACCAGGGACACTTCGTTACGGTGTGATCCAAACACAGCCTCTTTGGATCATATTCGCCAAGGACATGGTTATTACCCTCAAGAACGAGCTTATAGTGAATAGCTATAAGACCATTGATGGTAGAGGAGCCAAAGTGAAGATTGCTTATGGACCTTGCATTACCATTCAAGATGTTACTCACGTCATTATTCATGGGATTAGCATCCATGATTGTAAGCCAGGACATCGTCTAGGTTCAGATGGAGACGCCATTAGCGTATTTGGTTCCTCAAATGTTTGGGTTGACCATTGTTTCCTTGCTCATTGTGTCGACGGTCTCATTGATATTATTCACGCCTCAACTTCCATCACCATTTCCAACAATTACTTCACACAACACGATAAAGTGATGTTGTTAGGACACAGCGATGTATACAAAGCAGATAAGGTCATGAAAGTGACAATAGCTTTCAACCATTTTGCTAGCGGCCTATATGAAAGGATGCCAAGGGTACGATTTGGGTACGCCCATGTGGTCAACAACAGATATGATGGCTGGAGGATGTATGCCATTGGTGGTAGTGCTGAACCAACCATTCTTAGTGAAGGGAACTACTTTATAGCTCCAAGTAACCCCAGTGCTAAACAGGTAACCAAGAGGATAGTGAAGGGAAACTGGAAGAATTGGAAATGGAGGACTTCCAAAGATGCATTTGTGAATGGAGCCTATTTTGTTCCATCTGGGTATGGAAGTTGTGCCCCTTACTATTCAAGTTCTCAATATTTTGTTGCTGCTTCAGCATTCTTGGTGCCTTCATTGACTCTTCAAGCTGGTCCTCTGAGTTGTATTGTTGGGAAAGCTTGTTAA 1122 0.4349 MATVTPLIFFLIAISFLPLIASSSSYAYTTPKNPKNLILDTIDSCWRSNSNWASNRQALADCAVGFGKDAIGGKFGAIYEVTDASDDPVNPKPGTLRYGVIQTQPLWIIFAKDMVITLKNELIVNSYKTIDGRGAKVKIAYGPCITIQDVTHVIIHGISIHDCKPGHRLGSDGDAISVFGSSNVWVDHCFLAHCVDGLIDIIHASTSITISNNYFTQHDKVMLLGHSDVYKADKVMKVTIAFNHFASGLYERMPRVRFGYAHVVNNRYDGWRMYAIGGSAEPTILSEGNYFIAPSNPSAKQVTKRIVKGNWKNWKWRTSKDAFVNGAYFVPSGYGSCAPYYSSSQYFVAASAFLVPSLTLQAGPLSCIVGKAC 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0550 373 PRINTS Pollen allergen Amb family signature 274 293 IPR018082 -
Alju04g0550 373 PRINTS Pollen allergen Amb family signature 314 338 IPR018082 -
Alju04g0550 373 PRINTS Pollen allergen Amb family signature 85 110 IPR018082 -
Alju04g0550 373 PRINTS Pollen allergen Amb family signature 344 367 IPR018082 -
Alju04g0550 373 PRINTS Pollen allergen Amb family signature 62 79 IPR018082 -
Alju04g0550 373 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
Alju04g0550 373 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Alju04g0550 373 SUPERFAMILY Pectin lyase-like 41 364 IPR011050 -
Alju04g0550 373 Gene3D - 40 366 IPR012334 -
Alju04g0550 373 SMART amb_all 113 297 IPR002022 -
Alju04g0550 373 Pfam Pectate lyase 119 291 IPR002022 -
Alju04g0550 373 PANTHER PECTATE LYASE 18-RELATED 38 371 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0550 Alju-ChrAlju04 5631533 5634667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0550 9 373 Polysaccharide Lyase AT1G11920 66.234 0.0 521