Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0549 ATGGAGGGCATGAAGGATGGAAAGTATAGTGTGAAATCTGGATACTATGTAGCAAAAGGGTTTGTGAGGGAAAATAGGATTCACAGGCCTAGTAGCTCTGCAATGGTGACTGGGCAACTTTGGAGTTATGTCTGGAAGCTACATGTCCCTCCAAAAATTTGGCAATTCTTGTGGAGAATGTTGAATGAAGCTCTCGCTATAAAGGCATCTCTATACAGATGGAAATGCTGTCAAATTGATTTATGTCATATCTATAGTGAAGAACCTGAGACCGTAGAGCATATGATCTTGATGTGTCCTTGGGCAAGTAAATGTTGGTTCAGAAGTTCTCTTACATTAAGAATTAATAGGCAGCAGATAACTAGTATTAAAATGTGGTGTGAAGAGCTGCTGACAGGTAATAAGATTGATGAAGGAAGCAAGGCATTAGTGGCTGTAGTATGTTGGGGTATATGGAAAGCTAGGTGTGACAATGTGTTTAATGGAATAAAGGTAGATGCAGAAGATTCAACAGAAAATAATTACCTCAATACTACCGAGCTCAATTCAAGCTATACTCTCGTATCTGAGAATCTTATTCTCAACACCATAGATTCTTGTTGGAGATCCAACTCAAACTGGGCATCAAATCGCCAAGCCCTAGCTGATTGTGCTGTTGGATTTGGTAAAGATGCCATTGGAGGGACACTTCGTTATGGTGTGATCCAAACACAGCCTCTTTGGATAATATTCGTCAAGGACATGGTTATTACCCTCGAGAACGAGCTTATAGTGAATAGCGATAAGACCATTGATGGTAGAGGAGCCACAGTGGAGATTGCTCATGGACCTTGCATTACCATTCAAGATGTTACTCACGTCATTATTCATGGGATTAGCATCCATGATTGAAAAGTTGGGATGGTTAGGAGTAGTGAAGAGCATGTGGGGCACAGAGGAGGCTCAGATGGAGATGGCATTACCATATTTGGTTCTTCCAATATTTAG 987 0.4093 MEGMKDGKYSVKSGYYVAKGFVRENRIHRPSSSAMVTGQLWSYVWKLHVPPKIWQFLWRMLNEALAIKASLYRWKCCQIDLCHIYSEEPETVEHMILMCPWASKCWFRSSLTLRINRQQITSIKMWCEELLTGNKIDEGSKALVAVVCWGIWKARCDNVFNGIKVDAEDSTENNYLNTTELNSSYTLVSENLILNTIDSCWRSNSNWASNRQALADCAVGFGKDAIGGTLRYGVIQTQPLWIIFVKDMVITLENELIVNSDKTIDGRGATVEIAHGPCITIQDVTHVIIHGISIHDXKVGMVRSSEEHVGHRGGSDGDGITIFGSSNI 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0549 328 PRINTS Pollen allergen Amb family signature 219 244 IPR018082 -
Alju04g0549 328 PRINTS Pollen allergen Amb family signature 316 328 IPR018082 -
Alju04g0549 328 PRINTS Pollen allergen Amb family signature 255 271 IPR018082 -
Alju04g0549 328 PANTHER PECTATE LYASE 18-RELATED 181 328 IPR045032 GO:0030570
Alju04g0549 328 Pfam zinc-binding in reverse transcriptase 32 106 IPR026960 -
Alju04g0549 328 SUPERFAMILY Pectin lyase-like 195 328 IPR011050 -
Alju04g0549 328 MobiDBLite consensus disorder prediction 307 328 - -
Alju04g0549 328 Gene3D - 194 328 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0549 Alju-ChrAlju04 5594853 5597625 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0549 170 328 Polysaccharide Lyase AT4G22080 59.016 1.77e-64 207