Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0548 ATGGCCACCGTCACACCACTAATTTTCTTCCTTATAGCAATATCCTTCCTACCACTTATAGCTTCAAGCTCATCATATGCCTACACTACTCCCAGAACTCCCAAGAACCTCATCCTCGACACCATAGACTCTTGCTGGAGATCCAACTCAAACTGGGCATCAAATCGCCAAGCCCTAGCTGATTGTGCTGTTGGGTTTGGTAAGGATGCCATTGGAGGTAAGTTTGGTGCTATATATGAGGTCACTGATGCCTCCGATGACCCTGTGAACCCTAAACCAGGGACACTTCGTTACGGTGTGATCCAAACACAGCCTCTTTGGATCTTATTCGTCAAGGACATGGTTATTACCCTCAAGAACGAGCTTATAGTGAATAGCTATAAGACCATTGATGGTAGAGGAGCCAAAGTGGAGATTGCTTATGGACCTTGCATTACCATTCAAGATGTTACTCACGTCATTATTCATGGGATTTGAAAAGCTGGGATGGTAAGAAGCAGTAGTGATCATGTAGGACATCGTCTAGGTTCAGATGGAGACGCCATTAGCGTATTTGGTTCCTCAAATGTTTGGGTTGACCATTGTTTCCTTGCTTGTTGTGTCGACGGTCTCATTGATATTATTCACGCCTCAACTTCCATCACCATTTCCAACAATTACTTCACACAACACGATAAAGTGATGTTGTTAGGACACAGCGATGGATACAAAGCAGATAAGGTCATGAAAGTGACAATAGCTTTCAACCATTTTGCTAGCGGCCTATATGAAAGGATGCCAAGGGTAAGATTTGGGTACGCCCATGTGGTCAACAACAGATATGATGGTTGGAGGATGTATGCCATTGGTGGTAGTGCTGAACCAACCATGCTTAGTGAAGGGAACTACTTTATAGCTCCAAGTAACCCCAGTGCTAAACAGCGTTTGGCTGGTAAATATTCAGAAAAGCCTATTCTCATTGCTTTGAACTCCACAAGTTACAGGTGCTTTGGCTCTCACTTTCTTCAGAATGAGAAAGTAACTGAAGAGGGGTTAAGTGAAAGCGATAAGAAGTTGAAGGTGGCTGATCTTGTTAAAGAGGGCAGATGGGATCTCAGTTGTGTCTCTAGAAAGCTATCTGATATTCAGAAGGGTAAGATTCTATTGCTAGAAGTTCCAAGGGCAGGAAGGAAGGATGAAACAATATGGAGGGCATGTAAGGATGAGAAGTATAGTATGAAATCTGGATACTGTGTAGCAAAAGGTTTTGTGAGGGAAAATGGGATTCACAGGCCTAATAGCTCTACAATGGTGACTGGGCAACTCTAG 1308 0.4343 MATVTPLIFFLIAISFLPLIASSSSYAYTTPRTPKNLILDTIDSCWRSNSNWASNRQALADCAVGFGKDAIGGKFGAIYEVTDASDDPVNPKPGTLRYGVIQTQPLWILFVKDMVITLKNELIVNSYKTIDGRGAKVEIAYGPCITIQDVTHVIIHGIXKAGMVRSSSDHVGHRLGSDGDAISVFGSSNVWVDHCFLACCVDGLIDIIHASTSITISNNYFTQHDKVMLLGHSDGYKADKVMKVTIAFNHFASGLYERMPRVRFGYAHVVNNRYDGWRMYAIGGSAEPTMLSEGNYFIAPSNPSAKQRLAGKYSEKPILIALNSTSYRCFGSHFLQNEKVTEEGLSESDKKLKVADLVKEGRWDLSCVSRKLSDIQKGKILLLEVPRAGRKDETIWRACKDEKYSMKSGYCVAKGFVRENGIHRPNSSTMVTGQL 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0548 435 SMART amb_all 113 303 IPR002022 -
Alju04g0548 435 PANTHER PECTATE LYASE 18-RELATED 38 353 IPR045032 GO:0030570
Alju04g0548 435 PRINTS Pollen allergen Amb family signature 62 79 IPR018082 -
Alju04g0548 435 PRINTS Pollen allergen Amb family signature 178 199 IPR018082 -
Alju04g0548 435 PRINTS Pollen allergen Amb family signature 85 110 IPR018082 -
Alju04g0548 435 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Alju04g0548 435 PRINTS Pollen allergen Amb family signature 258 277 IPR018082 -
Alju04g0548 435 Pfam Pectate lyase 120 297 IPR002022 -
Alju04g0548 435 SUPERFAMILY Pectin lyase-like 41 307 IPR011050 -
Alju04g0548 435 Gene3D - 40 362 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0548 Alju-ChrAlju04 5571780 5584166 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0548 7 307 Polysaccharide Lyase AT1G11920 66.883 8.50e-153 436