Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0546 ATGGCCACCTTAACCCCAATAATCCTGCTCCTTTTTTCATGCTTTCTTCTTACATACTTGACTACAACCTCGAACGCAGATTCAACAGACAATAATTACCTCAATACTACCGAGCTCAATTCAAGCTATACTCTCGTATCTGAGAATCTTATTCTCAACACCATAGATTCTTGTTGGAGATCCAACACAAACTGGGCATCAAATCGCCAAGCCCTAGCTGATTGTGCTGTTGGATTTGGTAAAGATGCCATTGGAGGTAAGTTTGGTGCTATATATGAGGTCAATGATGCCTCCGATGATCCTGTGAACCCTAAACCAGGGACACTTCGTTATGGTGTGATCCAAACACAGCCTCTTTGGATAATATTCGTCAAGGACATGGTTATTACCCTCGAGAACGAGCTTATAGTGAATAGCGATAAGACCATTGATGGTAGAGGAGCCACAGTGGACATTGCTTATGGACCTTGCATTACCATTCAAGATGTTACTCGCGTCATTATTCATGGGATTAGCATCCATGATTGAAAAGTTGGGATGGTTAGGAGTAGTGAAGAGCATGTGGGGCACAGAGGAGGCTCAGATGGAGATGGCATTACCATATTTGGTTCTTCCAATATTTGGATCGAGCATTGCTTCTTGGCTCGTTGTACAGATGGCCTTATTGATGTTATTCATGCCTCAACTTCTGTCACACTCTCTAACAATTACTTTACCCAGCATGACAAAGTTACGAAGAGGGAAACAAGCGATAAGAGCTGGAATAAGTGGAAATGGAGGACGTACAAGGATAAATTCATGATGGAGCGTATTTTGTTCCATCAGGATATGGAAGTTGTGCCCCTTATTATTCAGCTTCACAATCTTTTGTAG 873 0.4215 MATLTPIILLLFSCFLLTYLTTTSNADSTDNNYLNTTELNSSYTLVSENLILNTIDSCWRSNTNWASNRQALADCAVGFGKDAIGGKFGAIYEVNDASDDPVNPKPGTLRYGVIQTQPLWIIFVKDMVITLENELIVNSDKTIDGRGATVDIAYGPCITIQDVTRVIIHGISIHDXKVGMVRSSEEHVGHRGGSDGDGITIFGSSNIWIEHCFLARCTDGLIDVIHASTSVTLSNNYFTQHDKVTKRETSDKSWNKWKWRTYKDKFMMERILFHQDMEVVPLIIQLHNLL 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0546 290 SUPERFAMILY Pectin lyase-like 53 256 IPR011050 -
Alju04g0546 290 Pfam Pectate lyase 135 254 IPR002022 -
Alju04g0546 290 PANTHER PECTATE LYASE 18-RELATED 39 244 IPR045032 GO:0030570
Alju04g0546 290 SMART amb_all 126 279 IPR002022 -
Alju04g0546 290 PRINTS Pollen allergen Amb family signature 195 216 IPR018082 -
Alju04g0546 290 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Alju04g0546 290 PRINTS Pollen allergen Amb family signature 134 150 IPR018082 -
Alju04g0546 290 PRINTS Pollen allergen Amb family signature 75 92 IPR018082 -
Alju04g0546 290 Gene3D - 52 261 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0546 Alju-ChrAlju04 5530736 5533138 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0546 7 244 Polysaccharide Lyase AT4G22080 63.071 4.56e-107 315