Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0545 ATGGCCACCGTCACACCACTAATTTTCTTCCTTATAGCAATATCCTTCCTACCACTTATAGCTTCAAGCTCATCATATGCCTACACTACTCCCAAAAATCCCAAGAACCTCATCCTCGACACCATAGACTCTTGCTGGAGATCCAACTCAAACTGGGCATCAAATCGCCAAGCCCTAGCTGATTGTGCTGTTGGGTTTGGTAAAGATGCCATTGGAGGTAAGTTTGGTGCTATATATGAGGTCACTGATGCCTCCGATGACCCTGTGAACCCTAAACCAGGGACACTTCGTTACGGTGTGATCCAAACACAGCCTCTTTGGATCATATTCGCCAAGGACATGGTTATTACCCTCAAGAACGAGCTTATAGTGAATAGCTATAAGACCATTGATGGTAGAGGAGCCAAAGTGAAGATTGCTTATGGACCTTGCATTACCATTCAACATGTTACTCACGTCATTATTCATGGGATTAGCATCCATGATTGTAAGCCAGGAAAAGCTGGGATGGTAAGAAGCAGTAGTGATCATGTAGGACATCGTCTAGGTTCAGATGGAGACGCCATTAGCGTATTTGGTTCCTCAAATGTTTGGGTTGACCATTGTTTCCTTGCTCGTTGTGTCGACGGTCTCATTGATATTATTCACGCCTCAACTTCCATCACCATTTCCAACAATTACTTCACACAACACGATAAAGTGATGTTGTTAGGACACAGCGATGTATACAAAGCAGATAAGGTCATGAAAGTGACAATAGCTTTCAACCATTTTGCTAGCGGCCTATATGAAAGGATGCCAAGGGTAAGATTTGGGTACGCCCATGTGGTCAACAACAGATATGATGGCTGGAGGATGTATGCCATTGGTGGTAGTGCTGAACCAACCATTCTTAGTGAAGGGAACTACTTTATAGCTCCAAGTAACCCCAGTGCTAAACAGGTAACCAAGAGGATAGTGAAGGGAAACTGGAAGAATTGGAAATGGAGGACTTCCAAAGATGCATTTGTGAATGGAGCCTATTTTGTTCCATCTGGGTATGGAAGTTGTGCCCCTTACTATTCAAGTTCTCAATCTTTTGTTGCTGCTTCAGCATTCTTGGTGCCTTCATTGACCCTTCAAGCTGGTCCTCTGAGTTGTATTGTTGGGAAAGCTTGTTAA 1161 0.4367 MATVTPLIFFLIAISFLPLIASSSSYAYTTPKNPKNLILDTIDSCWRSNSNWASNRQALADCAVGFGKDAIGGKFGAIYEVTDASDDPVNPKPGTLRYGVIQTQPLWIIFAKDMVITLKNELIVNSYKTIDGRGAKVKIAYGPCITIQHVTHVIIHGISIHDCKPGKAGMVRSSSDHVGHRLGSDGDAISVFGSSNVWVDHCFLARCVDGLIDIIHASTSITISNNYFTQHDKVMLLGHSDVYKADKVMKVTIAFNHFASGLYERMPRVRFGYAHVVNNRYDGWRMYAIGGSAEPTILSEGNYFIAPSNPSAKQVTKRIVKGNWKNWKWRTSKDAFVNGAYFVPSGYGSCAPYYSSSQSFVAASAFLVPSLTLQAGPLSCIVGKAC 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0545 386 Gene3D - 40 379 IPR012334 -
Alju04g0545 386 SUPERFAMILY Pectin lyase-like 41 376 IPR011050 -
Alju04g0545 386 PANTHER PECTATE LYASE 18-RELATED 38 384 IPR045032 GO:0030570
Alju04g0545 386 PRINTS Pollen allergen Amb family signature 327 351 IPR018082 -
Alju04g0545 386 PRINTS Pollen allergen Amb family signature 265 284 IPR018082 -
Alju04g0545 386 PRINTS Pollen allergen Amb family signature 185 206 IPR018082 -
Alju04g0545 386 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
Alju04g0545 386 PRINTS Pollen allergen Amb family signature 357 380 IPR018082 -
Alju04g0545 386 PRINTS Pollen allergen Amb family signature 85 110 IPR018082 -
Alju04g0545 386 PRINTS Pollen allergen Amb family signature 62 79 IPR018082 -
Alju04g0545 386 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Alju04g0545 386 SMART amb_all 113 310 IPR002022 -
Alju04g0545 386 Pfam Pectate lyase 120 304 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0545 Alju-ChrAlju04 5525214 5528336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0545 9 386 Polysaccharide Lyase AT1G11920 69.091 0.0 553