Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0507 ATGATGCAGCCTGGTCCTGGCATGGCTCCCCCAAACATGGGCCAACAGCCTCCCCAGCAGTACCCGCAGCAGCAACATCCCTACATGATGATGCCACCGCAGGCTCAGGCGCAGCCGATGTGGGCACCCTCTGTTCAGCCACCGCCTCAGTCGGTCGCTCCACTGCCGACAACTCAAGCCGCCCAGCCCACAAGCGCTGACGAGGTCCGTACTCTTTGGATCGGTGATTTGCAGTTCTGGATGGACGAGAACTATTTGTACAATTGTTTTGCTCTTACAGGCGAGGTGGTCTCGGCGAAAGTTATTCGAAACAAGCAAACTAATCAATCTGAAGGTTATGGGTTTATTGAGTTTCTCTCACGCGCAGCCGCTGAGAGAATACTTCAAACATTTAATGGAACCATTATGCCTAATGGTGGGCAAACCTTCAGATTGAACTGGGCAACTTTTGGTTCGGGTGAGAAGAGGCACGATGATACTCCAGATTACACAATATTTGTTGGAGATTTAGCTGCAGATGTTACGGATTACATGATGCAGGAGACGTTTCGGGCTAGGTATCCCTCAGTTAAAGGTGCAAAAGTTGTTATCGATAGACTCACTGGGAGGACAAAGGGTTACGGTTTTGTTAGGTTTGGAGATGAAAATGAACAAATTCGAGCTATGACTGAGATGCAAGGTGTATTATGTTCAACAAGACCCATGCGGATTGGACCAGCCACTAACAAAAACGCTGGCACTCAGCCAAAAGCTTCATACCAGAATCCTCAAGGGGCACAGAACGAGAATGATCCAAATAATTCAACTATTTTTGTGGGGAATTTGGATCCTAATGTAACGGATGATCATCTTAGGCAAGTTTTTGGCCAATATGGGGAGTTAGTACACGTTAAGATTCCAGCAGGCAAGCGTTGTGGGTTTGTTCAATATGCTGACAGGAGCTGTGCGGAAGAGGCACTGAGGTTATTAAATGGAACAACATTGGGCGGGCAGAGTGTTCGTCTCTCATGGGGCCGGAGTCCTGCAAACAAACAGACTCAGCCAGATCCAAACCAGTGGAATGGTGCTGCTGGGTATTACGGATACACTCAGGGGTACGAGAACTATGGATATGCTCCCGCAGCTGCACAGGACCCCAACATGTATGGAAGCTATCCTGGGTACACCAATTACCAGCCACCACAGCAGCAGCAGCAGCAGCAGCTAGGTGGATATAGTTGA 1221 0.4889 MMQPGPGMAPPNMGQQPPQQYPQQQHPYMMMPPQAQAQPMWAPSVQPPPQSVAPLPTTQAAQPTSADEVRTLWIGDLQFWMDENYLYNCFALTGEVVSAKVIRNKQTNQSEGYGFIEFLSRAAAERILQTFNGTIMPNGGQTFRLNWATFGSGEKRHDDTPDYTIFVGDLAADVTDYMMQETFRARYPSVKGAKVVIDRLTGRTKGYGFVRFGDENEQIRAMTEMQGVLCSTRPMRIGPATNKNAGTQPKASYQNPQGAQNENDPNNSTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQYADRSCAEEALRLLNGTTLGGQSVRLSWGRSPANKQTQPDPNQWNGAAGYYGYTQGYENYGYAPAAAQDPNMYGSYPGYTNYQPPQQQQQQQLGGYS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0507 406 MobiDBLite consensus disorder prediction 235 269 - -
Alju04g0507 406 FunFam Polyadenylate-binding protein RBP45 10 154 - -
Alju04g0507 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 150 IPR000504 GO:0003723
Alju04g0507 406 MobiDBLite consensus disorder prediction 1 17 - -
Alju04g0507 406 SUPERFAMILY RNA-binding domain, RBD 69 245 IPR035979 GO:0003676
Alju04g0507 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 242 IPR000504 GO:0003723
Alju04g0507 406 SUPERFAMILY RNA-binding domain, RBD 252 365 IPR035979 GO:0003676
Alju04g0507 406 MobiDBLite consensus disorder prediction 1 64 - -
Alju04g0507 406 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 61 344 - -
Alju04g0507 406 Gene3D - 245 349 IPR012677 -
Alju04g0507 406 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 340 IPR000504 GO:0003723
Alju04g0507 406 MobiDBLite consensus disorder prediction 383 406 - -
Alju04g0507 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 333 IPR000504 GO:0003723
Alju04g0507 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 137 IPR000504 GO:0003723
Alju04g0507 406 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 165 228 IPR000504 GO:0003723
Alju04g0507 406 MobiDBLite consensus disorder prediction 382 406 - -
Alju04g0507 406 Gene3D - 162 238 IPR012677 -
Alju04g0507 406 SMART rrm1_1 269 336 IPR000504 GO:0003723
Alju04g0507 406 SMART rrm1_1 71 146 IPR000504 GO:0003723
Alju04g0507 406 SMART rrm1_1 164 238 IPR000504 GO:0003723
Alju04g0507 406 FunFam Polyadenylate-binding protein RBP45C 155 246 - -
Alju04g0507 406 MobiDBLite consensus disorder prediction 237 269 - -
Alju04g0507 406 CDD RRM1_SECp43_like 71 151 - -
Alju04g0507 406 Gene3D - 10 158 IPR012677 -
Alju04g0507 406 FunFam Polyadenylate-binding protein RBP45C 247 373 - -
Alju04g0507 406 CDD RRM2_SECp43_like 162 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0507 Alju-ChrAlju04 5181322 5184794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0507 71 347 Eukaryotic Initiation Factors Gene Family AT4G34110 26.596 6.60e-27 111