Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0479 ATGATGGAATTGGGTGCCGTCCGATCGATTTCTTCATCAAGACTACATCGTTACAAGTGGAACTTTGCAAGTTCGCAAGTTTCCTTTCTCTCTCTCTCGCTCCCCCTTTCTGGCGATGGTGGGAGGGGAAAACCTCCATGTTTCACTCCTCACTTTCTCTGGTTGGGGCAAATCCAAAGCCCTAATCCTATCAGACCTATCCTTTTCCTCATCTTTGTGTATGTTCTGATCTTCATGGACCCTCAAAATCTTCTATTTTCCCGAGAAAACCCTAGGACCCTCTCGTTCTCAACTGCTCCAATTGTCTCTTCAAAACCCAATATCCCCAGTGAGATCGCGCAGAAGCCGTCCCCTTCGATTCTAGTGGGCCGGTTCAAGGCTTTGCTAAAGGAACGCGAGAATGAATTCAGGGCTTCCTCTGGTGATGACTTGCCGGTGCCACCCCCTAGCACTGAAGAAATTGTGCAAATTTACCAGTTGTTGTTATCGGACCTCACTTACAACTTGAAGCCTATTATTACGGATCTAACCATTATTGCTGAGCTTCAGGCAGAGCATGCCAGAGGCATCGCCGATGCAATTTGCGCTCGGATTCTTGAGGTGCCTGCAGATCAAAAGTTGCCGTCCCTCTATCTTTTGGACAGTATTGTGAAGAATGTTGGTCAGGAATATATTAGATACTTCTCTTCATGTCTGCCTGAAATTTTTTGTGAGGCATACAGGCAGGTTCATCCTAAGCTGCATAATGCTATGCGCCATCTCTTTGGCACCTGGTCAACAGTCTTTCCACCTTCTGTCCTACGCAAGATTGAAGCTCGACTGCAGTCTTCTCAGGCAATTGATAACCGGTCATCTAACACTGATCCCCTCAGGGTGTCTGAATCTCGTCAAGCAACTCATGGCATACATATCAATCCGAAGTACCTGCAACAGTTGGAACACTCTAACATGGATAGTGTTGGAGGTGAAAACTTGGAAGCAACAGTAAATTTGGGTATTGCAAATTTTGGCCACGGAGCTAGGAAGATGCATCAATCTTTATCCAGCAGGCTTGGGAGATCTTCAGGAGTTGGACTTGATAAGCCATCAGCAACTATAGATGAGTGTACAGTTGACAATTCTTCTAGCAGGATAGTTGAGAGAGATCCTCTTTATCATCCTGCATTTAATTATGGAGTTGGTAAAGCAGGAAGTAGAGGTGAAGAGTTGAGTGGGTGGAAACAAAAACATTATTCTGATGATGGTCGGAACCAGTTTCAGGCTTCTATGTCGGGTAGTCGTAGTAATGGGCATCAGCGTCAAAGTCTTAAAGCTTTAATAGATGCATATGGGAGTGATAAAAACAACGAAACCTTCAATAAGCCTTTGTTGGTTGAGCGTCAGGACATAAATGGTTTAAAGAAGGTTGTGTCAACATCATGGCAAAACACTGAAGAGGAGGAATTTGATTGGGAAGATATGAGTCCAACATTAGCAGATCATAGTAGGAATAATGATATCTTACCATCAAGTATTGGTTTCTCCAGGGAAAAGCCTGTTATTAGTGCAGCTACTTCAGAGCAGGATCCTAGGCATAGTTGGTCTAGTCGGTCGCAGCTACCACCAATGGATGATTCCTCGGTTATCCCAGGAGATAAATTTATATATTCAAGTTATGGACGTGGATCACCAGTTCATGCATCTGGATACCAAAATCAGACAAACCAAAGTTTAAGTTCCCGGCCGCCTCTTGAAGCTTGGAATATTAGAGGTCGAGCACGCAGTATTCAGATATCCCCTGTCAGTAACTTTCCAAATAGTGATATAAACCAATATGGGACTCGGTCTGCTTTGTCCAGAATGGGTTCCGCACTGGAGTCTCATGTGGAGATTCATCCAACAGTTTTACCAGCATCTCTTGGAATGAGGCCCCCAATTAATGTTCATGCTGTTCGCCCCCTCACCATAAATTATAGATTTCCCTTGGATCAACATGTCAAGAGTCAGTTTGAGCCAAATAATTCATCATTTTTGGACAGCGTTGAGAACAAGGATACAGGTTTATCAAAGCTGCATCAGCTGCCAACCCAGCTAGCTGGGCAGGTTTCGCTTAACCAGAAAAATCATGGGCAAGCACCTCAACAAGTTTTTCCATCCCCGGATTTGCAAGAGAGGTTACTTAGATCACAAGCTCCAGCAGCTTTGCAATTTAGTCACGGAAGCTCTTTGCTAGGGCATACTGATGCAATAAGTACAGCCATGCCAAATTCGCTTCCTGCTGTACAATTCCCTACAGTCCCAAACATTGCAAATAAATCTTCTCAATTACAAGGGGGAAATTTGATATCTTTACTTCCCGTCTCCCATCCTGCTATGTCACTAACAATACCTCATTCAAATACTGGTCCTATTGTGTCAACCCAACAACCAGGTGGTGCATTTTCTGGTTTAATTAATTCCCTTATGGCCCAAGGTTTGATATCGGTAACTAATCAACCTCCCGAACAGGATTCTGTTGGAACTGAGTTTAATCCAGATGTTCTAAAGATTCGTCATGAGTCTGCAATCAGTGCCTTGTATGGCAATCTTCCTAGGCAATGCACTACCTGTGGCCTTCGATTCAAGTGCCAAGAGCAGCACAGTAGTCATATGGATTGGCATGTTACTAAGAACAGGATGTCTAAAAACCATAAGCAGAAGCACTCTCGCAAGTGGTTTGTGAGTGAGAATATGTGGCTTAGTGGTGCAGAGGCATTGGGAACAGAATCAGTCCCTGTTTTTTTGCCTAGTGAGATTTTAGAGGAGACAAAAGATGATGAAGAGTTGGCTGTGCCAGCTGACGAGGATCAGAATACATGTTCATTATGTGGTGAGCCTTTCGATGAGTTTTACAGTGATGAAACTGAGGAATGGATGTACAGAGGAGCTGTATATATCAATGCACCCGAGGGAACAGTAGTAGGCATGGATAGGTCGCAATTAGGCCTCATTGTTCATGCTAAGTGCAGATCTGAGTCTAAGGTTGTCCCATCTGAAGATAATCGACTGGATGAAAGGGGCGCCGATGAGGAGGATAGTCAACGAAAACGGAGGCGGAGTTAG 3081 0.4424 MMELGAVRSISSSRLHRYKWNFASSQVSFLSLSLPLSGDGGRGKPPCFTPHFLWLGQIQSPNPIRPILFLIFVYVLIFMDPQNLLFSRENPRTLSFSTAPIVSSKPNIPSEIAQKPSPSILVGRFKALLKERENEFRASSGDDLPVPPPSTEEIVQIYQLLLSDLTYNLKPIITDLTIIAELQAEHARGIADAICARILEVPADQKLPSLYLLDSIVKNVGQEYIRYFSSCLPEIFCEAYRQVHPKLHNAMRHLFGTWSTVFPPSVLRKIEARLQSSQAIDNRSSNTDPLRVSESRQATHGIHINPKYLQQLEHSNMDSVGGENLEATVNLGIANFGHGARKMHQSLSSRLGRSSGVGLDKPSATIDECTVDNSSSRIVERDPLYHPAFNYGVGKAGSRGEELSGWKQKHYSDDGRNQFQASMSGSRSNGHQRQSLKALIDAYGSDKNNETFNKPLLVERQDINGLKKVVSTSWQNTEEEEFDWEDMSPTLADHSRNNDILPSSIGFSREKPVISAATSEQDPRHSWSSRSQLPPMDDSSVIPGDKFIYSSYGRGSPVHASGYQNQTNQSLSSRPPLEAWNIRGRARSIQISPVSNFPNSDINQYGTRSALSRMGSALESHVEIHPTVLPASLGMRPPINVHAVRPLTINYRFPLDQHVKSQFEPNNSSFLDSVENKDTGLSKLHQLPTQLAGQVSLNQKNHGQAPQQVFPSPDLQERLLRSQAPAALQFSHGSSLLGHTDAISTAMPNSLPAVQFPTVPNIANKSSQLQGGNLISLLPVSHPAMSLTIPHSNTGPIVSTQQPGGAFSGLINSLMAQGLISVTNQPPEQDSVGTEFNPDVLKIRHESAISALYGNLPRQCTTCGLRFKCQEQHSSHMDWHVTKNRMSKNHKQKHSRKWFVSENMWLSGAEALGTESVPVFLPSEILEETKDDEELAVPADEDQNTCSLCGEPFDEFYSDETEEWMYRGAVYINAPEGTVVGMDRSQLGLIVHAKCRSESKVVPSEDNRLDERGADEEDSQRKRRRS 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0479 1026 CDD CID_Pcf11 158 276 IPR047415 -
Alju04g0479 1026 MobiDBLite consensus disorder prediction 999 1026 - -
Alju04g0479 1026 FunFam polyadenylation and cleavage factor homolog 4 147 275 - -
Alju04g0479 1026 Gene3D - 148 276 IPR008942 -
Alju04g0479 1026 ProSitePatterns Zinc finger C2H2 type domain signature. 860 880 IPR013087 -
Alju04g0479 1026 ProSiteProfiles CID domain profile. 150 278 IPR006569 -
Alju04g0479 1026 MobiDBLite consensus disorder prediction 519 536 - -
Alju04g0479 1026 SMART 558neu5 153 275 IPR006569 -
Alju04g0479 1026 MobiDBLite consensus disorder prediction 514 540 - -
Alju04g0479 1026 MobiDBLite consensus disorder prediction 413 432 - -
Alju04g0479 1026 SUPERFAMILY ENTH/VHS domain 149 277 IPR008942 -
Alju04g0479 1026 Pfam CID domain 173 269 IPR006569 -
Alju04g0479 1026 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 139 1012 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Alju04g0479 1026 MobiDBLite consensus disorder prediction 415 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0479 Alju-ChrAlju04 4947057 4955057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0479 79 514 C2H2 Transcription Factor Family AT4G04885 46.485 3.03e-99 329