Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0477 ATGTTTCAACAGTCAAACATGTTTGATTCTAATAATATGCTGGACATGTCCCACAAGATGTCTTCTGACAGTGACCTAATGGGAGTAAGGAAGACCAATGACGAAGATTTCGAGATCCAATCGGTGACTGAAACAACCATGGAAGCTCCTTCAGGTGACGACCAAGACCCTGCAGACCAACGTCCCAAAAAGAAGCGCTATCACCGTCACACTCAGCGCCAAATACAAGAGTTGGAAGCCTTCTTCAAGGAATGTCCACACCCAGATGACAAACAAAGGAAAGAACTGAGCCGTGAGCTGGGTTTAGAGCCTTTGCAAATCAAGTTTTGGTTCCAAAACAAGCGCACCCAAATGAAGGCACAACATGAGCGCCATGAGAATTCTATTTTGAAGGCTGAGAATGAAAAGCTACGTGCTGAGAACAATAGGTACAAGGAAGCCCTAAGCAACGCTTCATGCCCTAACTGTGGAAGCCCCGCTGCTCTTGGTGAAATGTCCTTTGACGAGCAGCACCTCAGGATTGAGAATGCTCGCTTAAGAGAAGAGATAGATAGGATATCAGGAATTGCAGCCAAATACGTTGGGAAGCCAGTGACATCCTTTTCACACCTTTCATCTCATCACCTTCCTTCACGGTCGCTGGAAGATCTTGGAGTTGGTAGTAATTTTGTGTCACAGTCAGGGACAGTAGGGGAAATGTACAGTAGTGTGAGTAACAGTGATCTTATGAGGTCATCACTACCAGTGCCTTGTGAAGCTGACAAGCCCATGATTGTGGAGCTTGCTGTTGCAGCAATGGAGGAACTCACCAGATTGGCTCAGGCTGGAGAACCCTTGTGGGTTATCTCTAGTGACCATAATGAAGTTCTTAATGAAGAGGAATACTTGAGGACTTTTCCTAGGGGCTTATTTGGTCCTAAACCTTTGGGATTAATATCTGAAGCTTCAAGAGAATCCGCTGTCGTCATCATGAACCATGTTAACCTTGTTGAGATTCTCATGGACGTGAATCAATGGTCAAGGGTGTTTTGCGGCATTGTTTCAAGAGCAATGACACTTGAAGTCCTGTCAACTGGAGTGGCAGGAAACCATAACGGAGCATTGCAAGTGATGTCAGCTGAGTTCCAAGTGCCTTCACCTCTTGTTCCTACAAGAGAGAACTACTTCGTTAGGTACTGTAAGCAGCACGCAGATGGGACATGGGCAGTGGTCGATGTTTCCTTAGACAACCTACGACCAGCTGCTTTATCTAAAAGCCGAAGAAGGCCTTCTGGCTGTCTCATCCAAGAATTGCCAAATGGATACTCTAAGGTTACTTGGATTGAGCATGTAGAAGTGATGGATGATAGAAATTTGCACAATATATACAGACCCTTAGTCAATTCTGGCCTTGCCTTTGGAGCTAAACGTTGGGTGGCCACACTAGATAGACAGTGTGAACGTATTGCTAGTTCTATGGCCTGCAACATACCTGCAGGGGACCTTTGTGTGATAACAAGTTCAGAGGGAAGGAAGAGTATGCTGAAGCTAGCAGAGAGAATGGTGATGAGCTTCTGTGCGGGAGTAGGGGCTTCAACAGCACATGCATGGACAACACTATCAGCAACTGGGAATGATGATGTCAGGGTGATGACCAGAAAGAGTATGGATGATCCTGGCAGGCCTCCTGGTATTGTTCTCAGTGCTGCCACTTCCTTCTTCGTCCCTGTTCCTCCCAACAGGGTCTTCAATTTCCTCCGACACGAAAGCTCCCGAAGCGAGTGGGATATTTTATCCAATGGAGGTATGGTCCAAGAAATGGCTCACATAGCAAATGGTCGTGATCCAGGAAATTTTGTGTCTCTACTTCGTGTCAATAGTGCAAATTCAAGCCAAAGCAACATGGTGATACTTCAGGAGAGCTGTACGGACGCGACGGGGTCGTATGTGATATATGCTCCGGTGGATATTGTGGCGATGAACAATGTGCTTGGAGGAGGAGACCCTGACTATGTTGCTCTCTTGCCCTCTGGTTTTGCCATTCTTCCTGATGGCTCCTCTCTGAACAATAATGGAGGATCATCAGGGAATGTTGTTGTTGATGATGTTGGATTATCATCATCATTATCAGGAGGTTCTCTTCTCACTGTTGCATTTCAGATCTTAGTTGATTCAGTTCCAACAGCTAAACTCTCTCTGGGCTCAGTCGCTACTGTTAACAGTTTGATTAAGTGCACTGTTGAAAGGATCAAGGCTGCTGTCATCTAA 2247 0.4593 MFQQSNMFDSNNMLDMSHKMSSDSDLMGVRKTNDEDFEIQSVTETTMEAPSGDDQDPADQRPKKKRYHRHTQRQIQELEAFFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMKAQHERHENSILKAENEKLRAENNRYKEALSNASCPNCGSPAALGEMSFDEQHLRIENARLREEIDRISGIAAKYVGKPVTSFSHLSSHHLPSRSLEDLGVGSNFVSQSGTVGEMYSSVSNSDLMRSSLPVPCEADKPMIVELAVAAMEELTRLAQAGEPLWVISSDHNEVLNEEEYLRTFPRGLFGPKPLGLISEASRESAVVIMNHVNLVEILMDVNQWSRVFCGIVSRAMTLEVLSTGVAGNHNGALQVMSAEFQVPSPLVPTRENYFVRYCKQHADGTWAVVDVSLDNLRPAALSKSRRRPSGCLIQELPNGYSKVTWIEHVEVMDDRNLHNIYRPLVNSGLAFGAKRWVATLDRQCERIASSMACNIPAGDLCVITSSEGRKSMLKLAERMVMSFCAGVGASTAHAWTTLSATGNDDVRVMTRKSMDDPGRPPGIVLSAATSFFVPVPPNRVFNFLRHESSRSEWDILSNGGMVQEMAHIANGRDPGNFVSLLRVNSANSSQSNMVILQESCTDATGSYVIYAPVDIVAMNNVLGGGDPDYVALLPSGFAILPDGSSLNNNGGSSGNVVVDDVGLSSSLSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIKAAVI 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0477 748 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Alju04g0477 748 Gene3D - 50 137 - -
Alju04g0477 748 SUPERFAMILY Bet v1-like 502 744 - -
Alju04g0477 748 SUPERFAMILY Homeodomain-like 46 121 IPR009057 -
Alju04g0477 748 CDD homeodomain 64 122 IPR001356 GO:0003677
Alju04g0477 748 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Alju04g0477 748 SUPERFAMILY Bet v1-like 252 483 - -
Alju04g0477 748 ProSiteProfiles START domain profile. 251 484 IPR002913 GO:0008289
Alju04g0477 748 SMART START_1 260 481 IPR002913 GO:0008289
Alju04g0477 748 MobiDBLite consensus disorder prediction 44 72 - -
Alju04g0477 748 SMART HOX_1 62 125 IPR001356 GO:0003677
Alju04g0477 748 Pfam Homeodomain 64 119 IPR001356 GO:0003677
Alju04g0477 748 MobiDBLite consensus disorder prediction 1 19 - -
Alju04g0477 748 FunFam Homeobox-leucine zipper protein GLABRA 2 260 480 - -
Alju04g0477 748 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 60 747 IPR042160 -
Alju04g0477 748 Pfam START domain 261 481 IPR002913 GO:0008289
Alju04g0477 748 Coils Coil 115 150 - -
Alju04g0477 748 Gene3D - 319 486 IPR023393 -
Alju04g0477 748 MobiDBLite consensus disorder prediction 1 28 - -
Alju04g0477 748 CDD START_ArGLABRA2_like 255 480 - -
Alju04g0477 748 FunFam Homeobox-leucine zipper protein HDG1 51 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0477 Alju-ChrAlju04 4934887 4939057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0477 6 747 Homeobox Transcription Factor Family AT4G04890 78.820 0.0 1174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju04g0477 START 6e-55 CL0209