Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0474 ATGGCTGCCTCCCACCAATCTCTCCTCGACAAACCCAAAAAATCAATTTCCAGAACCATTTGGCTTCTTCTCTCTCTAGCTGCACTCTTCAGCTCTGCTCTTCTTGCTTCCTATCTCTTCTCACCCTCCTCCTTCATCTTCAACGTCTCTCACCCTCACCATATCTGCAACCATGCCCTCTACAAAGCATCATGCTTGTCCCATATCTCTGAATTACCCAAAGTTTCAATCTTTGCCTCTAAAGACGAAGAATCATCCCACTTGCTTCAATCCTTCCTGATGAAAACCACCTCACAAATCCAGAAAACTGTGGACTCAACCAGAGCCATCAAATACAGAGTCAACGGTCCAAAACAGCAACAAGCTCTGCAACTCTGTGAGCAGCTTCTGGACTTGTCTCTTGAAAGAGTTTGGGACTCAATGGTGGCTCTCACACAAAAGAGCAGCAAATCCTACCAAGATGCTCACACATGGCTCAGCACTGTCCTCACTAATCACATCACTTGCTTAGATGAGTTAGAAGGATCAGCTCGAGCCCTTATAGAGTCTGAGCTCAATGACTTAGTCTCCAGAGCCAGAACCTCCCTAGCCTTGCTTGTTCATGTTATGCCCTCTCAAATTGATGCCATTGATGAGCCACTTAACGGTGAGTTTCCCTCGTGGGTGACGAGTAAGGACAGGAAGCTTCTGGAAGCTTCTGCTAACGATATAAAGGCGAACGTTGTGGTGGCTAAGGATGGAAGTGGGAGGTTTAAGACTGTGAAAGAGGCAGTGGCTTCGGCACCAGATAATAGTAAGACGAGGTATGTGATATATGTGAAGAAGGGAGTTTATAAAGAGAATGTTGAGATCGGATCAAAGAAGAAGAATGTGATGCTGGTGGGTGATGGTAAAGATGCGACGATCATCACCGGAAGTTTGAATTTCGTTGATGGAACACCCACCTTCAGAACTGCCACCGTCGCTGCGGTTGGGGATGGATTCATAGGGCAAGACATATGGTTCCAGAACACGGCGGGCCCTCAGAAGCACCAAGCGGTGGCTCTCCGCGTCGGCGCCGATCTCTCAGTCATCAACCGCTGCCGTGTGGACGCCTACCAAGACACACTATACGCCCACTCCAACAGGCAATTCTACCGTGACTCCATAATCTCCGGCACCGTCGACTTTATCTTCGGCAACGCCGCCGTGGTGTTCCAGAAATGCTTCCTAGAGGCCCGAAAACCCATGAAAAACCAGAACAACATGGTCACAGCTCAAGGACGCGAAGACCCAAACCAGAACACAGGCACTTCAATCCAACAATGTAACTTAACTCCAAGCTCTGATCTCAAGCCAGTCATAGGGTCGATCAAAACCTTTCTGGGTCGTCCATGGAAGGAATATTCTAGAACTGTGGTGATGCAATCTTTGCTGAGTACCCATATTGATCCAGCAGGGTGGGCTCCATGGGACGATAAGCAATCGACTCTGAAGAACTTGTATTATGGAGAGTACAAAAACAGAGGACCTGGTGCCGGGACTGCTAAGAGAGTGAAATGGCCTGGTTATCATGTGATTACAAGTGCGGCTGAGGCGAGCAAGTTCACGGTGGCTCAGCTCATTCAAGGTGGCACTTGGCTTAAGAACACTGGTGTTGCCTACATTGAAGGGCTCTAA 1659 0.4846 MAASHQSLLDKPKKSISRTIWLLLSLAALFSSALLASYLFSPSSFIFNVSHPHHICNHALYKASCLSHISELPKVSIFASKDEESSHLLQSFLMKTTSQIQKTVDSTRAIKYRVNGPKQQQALQLCEQLLDLSLERVWDSMVALTQKSSKSYQDAHTWLSTVLTNHITCLDELEGSARALIESELNDLVSRARTSLALLVHVMPSQIDAIDEPLNGEFPSWVTSKDRKLLEASANDIKANVVVAKDGSGRFKTVKEAVASAPDNSKTRYVIYVKKGVYKENVEIGSKKKNVMLVGDGKDATIITGSLNFVDGTPTFRTATVAAVGDGFIGQDIWFQNTAGPQKHQAVALRVGADLSVINRCRVDAYQDTLYAHSNRQFYRDSIISGTVDFIFGNAAVVFQKCFLEARKPMKNQNNMVTAQGREDPNQNTGTSIQQCNLTPSSDLKPVIGSIKTFLGRPWKEYSRTVVMQSLLSTHIDPAGWAPWDDKQSTLKNLYYGEYKNRGPGAGTAKRVKWPGYHVITSAAEASKFTVAQLIQGGTWLKNTGVAYIEGL 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0474 552 CDD PMEI-like_4 64 200 - -
Alju04g0474 552 Pfam Pectinesterase 240 537 IPR000070 GO:0030599|GO:0042545
Alju04g0474 552 SUPERFAMILY Pectin lyase-like 238 551 IPR011050 -
Alju04g0474 552 FunFam Pectinesterase 234 552 - -
Alju04g0474 552 Pfam Plant invertase/pectin methylesterase inhibitor 53 187 IPR006501 GO:0004857
Alju04g0474 552 NCBIfam pectinesterase inhibitor domain 47 178 IPR006501 GO:0004857
Alju04g0474 552 ProSitePatterns Pectinesterase signature 1. 265 284 IPR018040 -
Alju04g0474 552 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 195 IPR035513 -
Alju04g0474 552 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 202 IPR035513 -
Alju04g0474 552 SMART PMEI_2 41 198 IPR006501 GO:0004857
Alju04g0474 552 Gene3D - 234 552 IPR012334 -
Alju04g0474 552 PANTHER PECTINESTERASE 35 542 - -
Alju04g0474 552 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0474 Alju-ChrAlju04 4910462 4913429 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0474 1 552 Carbohydrate Esterase AT1G11580 55.338 0.0 610