Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0460 ATGGTGCGGTCACTCCGTCTCGGTCTCTCGAACCGCAGGGCCGTGCCTACGTCGGTCACCTCCTTTCGTCAAAAAAGAAGCCCCGAGCATCCGAAATTCTTCACATTCTGTTTTGTTTCGCGTTCCGAGGAAAACCCTAGTAAATCAAAATCCTCCAAGATGCAAATCTTCGTCAAGACCCTTACCGGCAAGACCGTCACTCTTGAAGTTGAGAGTTCAGATACCATAGACAATGTAAAGACAAAGATTCAGGACAAGGAAGGGATCCCACCGGACCAGCAGCGACTGATTTTTGCGGGTAAGCAGCTTGAGGACGGACGTACCCTTGCCGACTATAACATCCAAAAGGAATCAACTCTCCACCTCGTGCTCCGTTTACGTGGTGGTATGCAGATATTTGTCAAGACTCTCACTGGTAAAACCATTACCCTGGAGGTGGAAAGTTCCGACACTATTGATAACGTCAAGGCAAAGATCCAAGATAAAGAGGGCATCCCTCCAGACCAGCAGAGGATAATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGTACCCTGGCTGATTACAACATCCAGAAAGAGTCCACTCTTCACCTTGTGCTTCGTCTCCGTGGTGGTATGCAGATTTTTGTCAAGACTCTGACCGGGAAGACCATTACCCTGGAGGTGGAAAGTTCCGACACTATTGATAACGTCAAGGCAAAGATCCAAGATAAAGAGGGCATCCCTCCAGACCAGCAGAGGCTAATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTGGCTGATTACAACATCCAGAAAGAGTCCACTCTTCACCTTGTGCTTCGTCTCCGTGGTGGTATGCAGATTTTTGTCAAGACTCTGACCGGGAAGACCATTACCCTGGAGGTGGAAAGTTCCGACACTATTGATAACGTCAAGGCAAAGATCCAAGATAAAGAGGGCATCCCTCCAGACCAGCAGAGGTTAATCTTTGCTGGAAAGCAGCTTGAGGATGGCCGTACCCTGGCTGATTACAACATCCAGAAAGAGTCCACTCTTCACCTTGTGCTTCGTCTCCGTGGTGGTATGCAGATTTTTGTCAAGACTCTGACCGGGAAGACCATTACCCTGGAGGTGGAAAGTTCCGACACCATTGATAACGTCAAGGCAAAGATCCAGGACAAAGAGGGAATCCCACCAGACCAGCAAAGGCTTATCTTCGCTGGTAAACAGCTTGAAGATGGCCGTACCTTGGCTGACTATAACATCCAGAAGGAGTCCACCCTTCACCTTGTTCTGCGTCTTCGTGGTGGTATGCAGATTTTTGTGAAGACCCTTACTGGCAAGACTATCACCTTGGAGGTCGAGAGCTCTGACACAATTGACAATGTGAAGGCTAAAATCCAAGATAAGGAAGGAATCCCTCCTGACCAGCAAAGGTTGATTTTCGCTGGAAAGCAGCTGGAAGATGGACGCACATTGGCTGATTATAACATTCAAAAGGAGTCTACCCTTCACCTTGTGCTTCGTCTCAGGGGAGGTATGCAAATCTTTGTGAAGACATTGACAGGCAAAACCATCACCCTTGAGGTTGAGAGTTCGGATACCATTGACAATGTGAAGGCAAAAATCCAGGACAAGGAAGGAATCCCACCAGACCAGCAAAGATTGATCTTTGCAGGGAAGCAGTTGGAGGATGGAAGAACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTCCGTCTTCGTGGAGGATTCTGA 1761 0.4861 MVRSLRLGLSNRRAVPTSVTSFRQKRSPEHPKFFTFCFVSRSEENPSKSKSSKMQIFVKTLTGKTVTLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRIIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0460 586 CDD Ubl_ubiquitin 510 585 - -
Alju04g0460 586 SMART ubq_7 510 581 IPR000626 GO:0005515
Alju04g0460 586 SMART ubq_7 206 277 IPR000626 GO:0005515
Alju04g0460 586 SMART ubq_7 130 201 IPR000626 GO:0005515
Alju04g0460 586 SMART ubq_7 282 353 IPR000626 GO:0005515
Alju04g0460 586 SMART ubq_7 358 429 IPR000626 GO:0005515
Alju04g0460 586 SMART ubq_7 54 125 IPR000626 GO:0005515
Alju04g0460 586 SMART ubq_7 434 505 IPR000626 GO:0005515
Alju04g0460 586 ProSiteProfiles Ubiquitin domain profile. 510 585 IPR000626 GO:0005515
Alju04g0460 586 ProSitePatterns Ubiquitin domain signature. 80 105 IPR019954 -
Alju04g0460 586 FunFam Polyubiquitin 3 206 281 - -
Alju04g0460 586 CDD Ubl_ubiquitin 358 433 - -
Alju04g0460 586 ProSiteProfiles Ubiquitin domain profile. 54 129 IPR000626 GO:0005515
Alju04g0460 586 FunFam Polyubiquitin 3 130 205 - -
Alju04g0460 586 ProSitePatterns Ubiquitin domain signature. 460 485 IPR019954 -
Alju04g0460 586 FunFam Polyubiquitin 3 434 509 - -
Alju04g0460 586 SUPERFAMILY Ubiquitin-like 509 585 IPR029071 -
Alju04g0460 586 CDD Ubl_ubiquitin 206 281 - -
Alju04g0460 586 SUPERFAMILY Ubiquitin-like 281 357 IPR029071 -
Alju04g0460 586 ProSitePatterns Ubiquitin domain signature. 384 409 IPR019954 -
Alju04g0460 586 FunFam Polyubiquitin 3 510 585 - -
Alju04g0460 586 SUPERFAMILY Ubiquitin-like 129 205 IPR029071 -
Alju04g0460 586 ProSiteProfiles Ubiquitin domain profile. 282 357 IPR000626 GO:0005515
Alju04g0460 586 ProSiteProfiles Ubiquitin domain profile. 206 281 IPR000626 GO:0005515
Alju04g0460 586 ProSitePatterns Ubiquitin domain signature. 232 257 IPR019954 -
Alju04g0460 586 CDD Ubl_ubiquitin 54 129 - -
Alju04g0460 586 ProSiteProfiles Ubiquitin domain profile. 434 509 IPR000626 GO:0005515
Alju04g0460 586 FunFam Polyubiquitin 3 54 129 - -
Alju04g0460 586 SUPERFAMILY Ubiquitin-like 433 509 IPR029071 -
Alju04g0460 586 ProSiteProfiles Ubiquitin domain profile. 358 433 IPR000626 GO:0005515
Alju04g0460 586 ProSitePatterns Ubiquitin domain signature. 156 181 IPR019954 -
Alju04g0460 586 ProSitePatterns Ubiquitin domain signature. 536 561 IPR019954 -
Alju04g0460 586 PANTHER UBIQUITIN 358 437 - -
Alju04g0460 586 FunFam Polyubiquitin 3 358 433 - -
Alju04g0460 586 Gene3D - 510 586 - -
Alju04g0460 586 Gene3D - 434 509 - -
Alju04g0460 586 Gene3D - 47 129 - -
Alju04g0460 586 Gene3D - 282 357 - -
Alju04g0460 586 Gene3D - 130 205 - -
Alju04g0460 586 Gene3D - 206 281 - -
Alju04g0460 586 Gene3D - 358 433 - -
Alju04g0460 586 CDD Ubl_ubiquitin 434 509 - -
Alju04g0460 586 CDD Ubl_ubiquitin 130 205 - -
Alju04g0460 586 PRINTS Ubiquitin signature 237 257 IPR019956 -
Alju04g0460 586 PRINTS Ubiquitin signature 216 236 IPR019956 -
Alju04g0460 586 PRINTS Ubiquitin signature 258 279 IPR019956 -
Alju04g0460 586 CDD Ubl_ubiquitin 282 357 - -
Alju04g0460 586 FunFam Polyubiquitin 3 282 357 - -
Alju04g0460 586 Pfam Ubiquitin family 512 583 IPR000626 GO:0005515
Alju04g0460 586 Pfam Ubiquitin family 360 431 IPR000626 GO:0005515
Alju04g0460 586 Pfam Ubiquitin family 208 279 IPR000626 GO:0005515
Alju04g0460 586 Pfam Ubiquitin family 132 203 IPR000626 GO:0005515
Alju04g0460 586 Pfam Ubiquitin family 436 507 IPR000626 GO:0005515
Alju04g0460 586 Pfam Ubiquitin family 284 355 IPR000626 GO:0005515
Alju04g0460 586 Pfam Ubiquitin family 56 127 IPR000626 GO:0005515
Alju04g0460 586 SUPERFAMILY Ubiquitin-like 205 281 IPR029071 -
Alju04g0460 586 ProSiteProfiles Ubiquitin domain profile. 130 205 IPR000626 GO:0005515
Alju04g0460 586 SUPERFAMILY Ubiquitin-like 357 433 IPR029071 -
Alju04g0460 586 SUPERFAMILY Ubiquitin-like 33 129 IPR029071 -
Alju04g0460 586 ProSitePatterns Ubiquitin domain signature. 308 333 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0460 Alju-ChrAlju04 4779011 4782067 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0460 510 586 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 5.02e-46 156