Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0456 ATGAAGTTAGCTTTGCCCTCAAAATGCATTGACTTATGTGAACTCCATGAAGCTTTGAAACAATTGTACTTAATCCCACTTGCAATAAACAAAGAGCTTTACTGGCCCAACGACAGGGACTTTCGGCCTAGTGACTCTAAAATATCGCTGTACCGCGCTGCCGCGGCTGGGCGGTCACCTCATCTGGTCATAAAAGGAGCCCCAAGCCTCCAAATTCCTCCGCAACACAATCTGTTTTATTTAGCTGCCGAAGAAAACCCGTGCAAACCAAAGTACAAGATGCAAATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGCTCAGATACCATAGACAATGTCAAGGCAAAGATTCAAGACAAGGAAGGGATCCCACCGGACCAGCAGCGACTGATTTTTGCGGGTAAGCAGCTTGAGGACGGACGTACCCTTGCCGACTATAACATCCAAAAGGAATCGACTCTCCACCTCGTGCTCCGTTTACGTGGTGGAATGCAGATCTTTGTCAAGACTCTCACCGGTAAGACCATCACCCTCGAGGTGGAGAGCTCAGACACCATCGACAACGTGAAGGCCAAGATCCAAGATAAGGAGGGTATCCCTCCAGACCAGCAGAGGCTTATCTTTGCGGGGAAGCAGCTTGAGGATGGCCGTACCCTGGCTGATTATAACATCCAAAAAGAGTCCACCCTCCACCTTGTGCTTCGTCTCCGTGGAGGAATGCAAATTTTTGTCAAGACTCTGACCGGGAAGACCATTACCCTGGAGGTGGAAAGTTCTGACACTATTGATAACGTCAAGGCAAAGATCCAGGACAAAGAGGGAATCCCACCGGACCAACAAAGGCTTATCTTTGCTGGTAAACAGCTTGAGGATGGCCGGACCTTGGCTGACTATAACATCCAGAAGGAGTCCACCCTTCACCTTGTTCTACGTCTCCGTGGTGGCATGCAGATTTTTGTGAAGACTCTTACTGGCAAGACTATAACCTTGGAGGTTGAGAGCTCTGACACAATTGACAATGTTAAGGCTAAGATCCAAGATAAGGAAGGCATCCCCCCTGACCAGCAGAGGTTGATTTTCGCTGGAAAGCAGCTGGAAGATGGACGCACATTGGCTGACTACAACATTCAGAAGGAGTCCACCCTTCACCTTGTGCTTCGTCTTAGGGGAGGTATGCAGATCTTTGTGAAGACCTTAACAGGCAAAACTATCACCCTTGAGGTTGAGAGTTCGGATACCATTGACAATGTGAAGGCAAAAATTCAGGACAAGGAAGGAATCCCGCCAGACCAGCAAAGATTGATCTTTGCAGGGAAGCAGTTGGAGGATGGAAGAACCCTTGCTGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGTTCTGCGTCTTCGCGGAGGATTCTGA 1425 0.4884 MKLALPSKCIDLCELHEALKQLYLIPLAINKELYWPNDRDFRPSDSKISLYRAAAAGRSPHLVIKGAPSLQIPPQHNLFYLAAEENPCKPKYKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0456 474 PANTHER UBIQUITIN 246 323 - -
Alju04g0456 474 SUPERFAMILY Ubiquitin-like 321 397 IPR029071 -
Alju04g0456 474 CDD Ubl_ubiquitin 398 473 - -
Alju04g0456 474 ProSitePatterns Ubiquitin domain signature. 348 373 IPR019954 -
Alju04g0456 474 FunFam Polyubiquitin 3 398 473 - -
Alju04g0456 474 CDD Ubl_ubiquitin 246 321 - -
Alju04g0456 474 ProSitePatterns Ubiquitin domain signature. 272 297 IPR019954 -
Alju04g0456 474 ProSitePatterns Ubiquitin domain signature. 120 145 IPR019954 -
Alju04g0456 474 CDD Ubl_ubiquitin 94 169 - -
Alju04g0456 474 FunFam Polyubiquitin 3 322 397 - -
Alju04g0456 474 SUPERFAMILY Ubiquitin-like 91 169 IPR029071 -
Alju04g0456 474 ProSiteProfiles Ubiquitin domain profile. 170 245 IPR000626 GO:0005515
Alju04g0456 474 Pfam Ubiquitin family 248 319 IPR000626 GO:0005515
Alju04g0456 474 Pfam Ubiquitin family 400 471 IPR000626 GO:0005515
Alju04g0456 474 Pfam Ubiquitin family 96 167 IPR000626 GO:0005515
Alju04g0456 474 Pfam Ubiquitin family 324 395 IPR000626 GO:0005515
Alju04g0456 474 Pfam Ubiquitin family 172 243 IPR000626 GO:0005515
Alju04g0456 474 ProSiteProfiles Ubiquitin domain profile. 94 169 IPR000626 GO:0005515
Alju04g0456 474 ProSiteProfiles Ubiquitin domain profile. 322 397 IPR000626 GO:0005515
Alju04g0456 474 ProSitePatterns Ubiquitin domain signature. 424 449 IPR019954 -
Alju04g0456 474 ProSiteProfiles Ubiquitin domain profile. 246 321 IPR000626 GO:0005515
Alju04g0456 474 PRINTS Ubiquitin signature 125 145 IPR019956 -
Alju04g0456 474 PRINTS Ubiquitin signature 104 124 IPR019956 -
Alju04g0456 474 PRINTS Ubiquitin signature 146 167 IPR019956 -
Alju04g0456 474 CDD Ubl_ubiquitin 322 397 - -
Alju04g0456 474 ProSiteProfiles Ubiquitin domain profile. 398 473 IPR000626 GO:0005515
Alju04g0456 474 FunFam Polyubiquitin 3 246 321 - -
Alju04g0456 474 SUPERFAMILY Ubiquitin-like 245 321 IPR029071 -
Alju04g0456 474 FunFam Polyubiquitin 3 170 245 - -
Alju04g0456 474 ProSitePatterns Ubiquitin domain signature. 196 221 IPR019954 -
Alju04g0456 474 CDD Ubl_ubiquitin 170 245 - -
Alju04g0456 474 Gene3D - 322 397 - -
Alju04g0456 474 Gene3D - 170 245 - -
Alju04g0456 474 Gene3D - 398 474 - -
Alju04g0456 474 Gene3D - 246 321 - -
Alju04g0456 474 Gene3D - 88 169 - -
Alju04g0456 474 SUPERFAMILY Ubiquitin-like 169 245 IPR029071 -
Alju04g0456 474 SUPERFAMILY Ubiquitin-like 397 473 IPR029071 -
Alju04g0456 474 FunFam Polyubiquitin 3 94 169 - -
Alju04g0456 474 SMART ubq_7 398 469 IPR000626 GO:0005515
Alju04g0456 474 SMART ubq_7 94 165 IPR000626 GO:0005515
Alju04g0456 474 SMART ubq_7 170 241 IPR000626 GO:0005515
Alju04g0456 474 SMART ubq_7 246 317 IPR000626 GO:0005515
Alju04g0456 474 SMART ubq_7 322 393 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0456 Alju-ChrAlju04 4745128 4748046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0456 398 474 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 2.41e-46 155