LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju04g0447	ATGATTTCAGATAGGGGAAAGAACTCGGCTGGGACAATTACGGCGATAGTTGTTCCCACGGTGATATTTATATTGCTCGTTTTCCTCTGCTTCTTCTGCCTTATTAAAAGGAGAACTAAAAAGAACGATTCCTCAGTTCCCCAAGAAAGTGATGTTGACATTTCAAATGTAGTGTCTCTGCAATTTGATTTGGATGTCATCAAATCAGCCACAAACAACTTCTCTCCTGACAATAAACTAGGTCAAGGAGGATTTGGTGAAGTGTACAAGGGTATCCTAACCGGTGGACAAGTGTTGGCTGTGAAGAGGTTATCAAGTAGCTCCAAACAAGGTGTAGAACAATTTAAAAATGAAGTTGTTACTATGGCAAAACTTCAACATAGAAATCTTGTAAGGTTACTAGGATTCTGCTTGGATGAAGGAGAAAAGATACTCATATATGAATTTGTTCCCAAGAAAAGCCTGGATAGATTTCTATTTGAATATGCTATGCATGGTCAAATTTCAGTCAAATCTGATATATATAGTTTTGGTGTCTTGACCCTAGAGATTGTCTCGGGCAGAAAGAATACATCTTTCTACATATCAAGTTGTGCTGAAGACTTATTAAGCTATGCTTGGAAGCTTTGGAAGAAAGGGACGCCATTAGAATTGCTGGATCCTAGTCTAACAGACTCTTATTCAAGAAACCAAGTTATTAAATGCATTCATATGAGCTTGTTGTGTGTTCAGGAAAGCCAAGCTCTGAGACCAACAATACAATCCATTTTGGTGATGTTAGGAAGTGACTCTGTGACCCTACCAGCCCCTGAAGAGCCAGCATTTTTTGTCGATCATAGTGGAACAGATTCAAACAACCCCGCCATAATTGATGGAAATAGGTCTGATCAATCAACAAGTGGATCTGTGCAATTGTCTGTGGATAAAGATCCGATTACTGACTTACACCCTCAATTGTTGTCATTTAATTGCTCTTCGCTCTTAGAATATGGCAAGATTTATAAAAGTCGTCTGTGATTTCAAAGTTCTTTTGAGGAGGCTTTGCTGTGCTATGATCCTAAGGGGGATGGTTCTGGTCCTTGCTCTGACAAGTTTCACAAATGGCGTAATGGAGGGGGCACTTTGCACGAATCGGCTTCGATAGACTCATCTGCGGTAGTAGAGATTGGCGCTGTTGTTCATTCAAAAGCAGTTGTTGGAGCAAATGTTCATATAGGGTCTGGAACGATTGTTGGGCCTTCTGTTATAATTGGCCATTCAACAAAAATAGGGTACAATGTTGCTCTTGGTAATTGCCGGGTGGGTGAATTGTGTGTAGTCCACAATGGAGTCTGCATTGGTCAAGATGGGTTTGGATTTTATGTAGATGGTAATGGTAATATGATAAAGAAGCCTCAGATGTTGACTGTAATAATAGGGGCACATGTGGAGATTGGTGCTAATACATGCATTGACCGGGGTAGTTGGAGAGATACAATCATTGGGGATCATACAAAGTTGGATAATTTAGTTCAGATTGGTCATAATGTAGTTATTGGGAAGAATTGTATGATTTGTGGGCAAGTAGGGATTGCGGGTTCAGCAACCATAGGTGATTATGTGACTATGGGGGGAAGAGTAGCTGTGCGAGATCATGTTTCTGTTGTGTCAAAGGTTCGGCTTGCAGCGACGAGTTGTGTCACCAAGGACATCCTAGAGCCTGGGGATTATGGTGGCTTCCCTGCTGTTCCCATTCATAAATGGCGGAGACAAATTGTCAGCAGCTGTAGGACTCCAGGAAAATCGGGTCCTTAA	1794	0.4125	MISDRGKNSAGTITAIVVPTVIFILLVFLCFFCLIKRRTKKNDSSVPQESDVDISNVVSLQFDLDVIKSATNNFSPDNKLGQGGFGEVYKGILTGGQVLAVKRLSSSSKQGVEQFKNEVVTMAKLQHRNLVRLLGFCLDEGEKILIYEFVPKKSLDRFLFEYAMHGQISVKSDIYSFGVLTLEIVSGRKNTSFYISSCAEDLLSYAWKLWKKGTPLELLDPSLTDSYSRNQVIKCIHMSLLCVQESQALRPTIQSILVMLGSDSVTLPAPEEPAFFVDHSGTDSNNPAIIDGNRSDQSTSGSVQLSVDKDPITDLHPQLLSFNCSSLLEYGKIYKSRLXFQSSFEEALLCYDPKGDGSGPCSDKFHKWRNGGGTLHESASIDSSAVVEIGAVVHSKAVVGANVHIGSGTIVGPSVIIGHSTKIGYNVALGNCRVGELCVVHNGVCIGQDGFGFYVDGNGNMIKKPQMLTVIIGAHVEIGANTCIDRGSWRDTIIGDHTKLDNLVQIGHNVVIGKNCMICGQVGIAGSATIGDYVTMGGRVAVRDHVSVVSKVRLAATSCVTKDILEPGDYGGFPAVPIHKWRRQIVSSCRTPGKSGP	597

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju04g0447	597	Gene3D	Transferase(Phosphotransferase) domain 1	154	266	-	-
	Alju04g0447	597	Pfam	Protein tyrosine and serine/threonine kinase	77	159	IPR001245	GO:0004672\|GO:0006468
	Alju04g0447	597	CDD	LbH_LpxD	384	582	IPR007691	GO:0009245\|GO:0016410
	Alju04g0447	597	ProSiteProfiles	Protein kinase domain profile.	74	369	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju04g0447	597	ProSitePatterns	Protein kinases ATP-binding region signature.	80	102	IPR017441	GO:0005524
	Alju04g0447	597	SUPERFAMILY	Protein kinase-like (PK-like)	60	279	IPR011009	-
	Alju04g0447	597	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	36	149	-	-
	Alju04g0447	597	Pfam	Bacterial transferase hexapeptide (six repeats)	491	526	IPR001451	-
	Alju04g0447	597	Gene3D	Hexapeptide repeat proteins	373	576	-	-
	Alju04g0447	597	SUPERFAMILY	Trimeric LpxA-like enzymes	367	585	IPR011004	-
	Alju04g0447	597	MobiDBLite	consensus disorder prediction	285	304	-	-
	Alju04g0447	597	PANTHER	UDP-3-O-ACYLGLUCOSAMINE N-ACYLTRANSFERASE	355	591	IPR007691	GO:0009245\|GO:0016410
	Alju04g0447	597	ProSitePatterns	Hexapeptide-repeat containing-transferases signature.	387	415	IPR018357	GO:0016740
	Alju04g0447	597	Gene3D	Phosphorylase Kinase; domain 1	35	149	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju04g0447	Alju-ChrAlju04	4661898	4669441	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju04g0447	24	318	Receptor kinase-like Gene Family	AT4G23280	34.195	3.05e-50	182

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Alju04g0447		PK_Tyr_Ser-Thr	4.4e-15	CL0016