Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0400 ATGGATCTCATGAAACAAATGAAGAAAACCACAACCACAGGTCGCAAGAAGATTGAGATAAAGGAGATAGATAAGGATTCCAACAAACAAGTCACCTTCTCAAAACGACGCACCGGACTGTTCAAAAAAGCAAGCGAGCTCTGCGTTTTGTGCAATGCTCAAATAGCCATCGTCGTGTTCTCGCCTGCCGACAAAGCCTTCTGCTTCGGCCAGCCCAATGTCGAAGCCGTTCTCCGCCGCTACCTAACAACAGAAGACCGTCGCGGGGAAGAACCGGTCCGGGCGGCGAGCGAGGCCGGTTCTTCGGTGTCGTCTTACGAGGAACTTAACAGACAACACGAGGAAGCAGTTAGGGCATTGGAGATGGAGAAGCAACAATTGGAGGAGATTGAAAATGTGGCTAGGGTTTGGGACAGAGGAAATTGGTGGGATGAATCAATTGATGAGATGGATTTGGATCAGTTAGAGCAATATGCGATGGCTATGCATGAGTTAAGAAGAAAGGTGGCTGAGAAGGCTGATGATTTCATGAGGGTTGCAATAATGCAGCCGCAGCCGCCGCCGGTGCCGTCATTTTATGGAGAGAGTTCATTGGGTGGTCTTCTTCATGGAGGTGGAGGCGGCTATGGTGGTTTTGCTAACCAGTTTGGTGGCGGCGGCGGCCTTGTTGCTTATCATCATGACAAGTTTGAATTTTGA 699 0.495 MDLMKQMKKTTTTGRKKIEIKEIDKDSNKQVTFSKRRTGLFKKASELCVLCNAQIAIVVFSPADKAFCFGQPNVEAVLRRYLTTEDRRGEEPVRAASEAGSSVSSYEELNRQHEEAVRALEMEKQQLEEIENVARVWDRGNWWDESIDEMDLDQLEQYAMAMHELRRKVAEKADDFMRVAIMQPQPPPVPSFYGESSLGGLLHGGGGGYGGFANQFGGGGGLVAYHHDKFEF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0400 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 69 IPR002100 GO:0003677|GO:0046983
Alju04g0400 232 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Alju04g0400 232 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Alju04g0400 232 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Alju04g0400 232 PANTHER MADS BOX PROTEIN 15 172 - -
Alju04g0400 232 Gene3D - 26 91 IPR036879 GO:0003677|GO:0046983
Alju04g0400 232 Coils Coil 155 175 - -
Alju04g0400 232 CDD MADS_MEF2_like 18 88 IPR033896 GO:0000977|GO:0045944
Alju04g0400 232 Coils Coil 103 133 - -
Alju04g0400 232 MobiDBLite consensus disorder prediction 88 109 - -
Alju04g0400 232 SUPERFAMILY SRF-like 14 84 IPR036879 GO:0003677|GO:0046983
Alju04g0400 232 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Alju04g0400 232 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Alju04g0400 232 FunFam Agamous-like MADS-box protein AGL62 25 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0400 Alju-ChrAlju04 3488058 3488756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0400 12 208 Type I MADS-box Gene Family AT5G60440 36.869 4.78e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju04g0400 SRF-TF 9.1e-23 No_clan