Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0399 ATGGCAATGATGAACAACAAAAAGGGTAGCTCAGGTCGTCAAAAGATTCCAATCGAGAAAATACCAAAAAAAAGTAATTTGCAAGTTACATTTTCCAAGCGTCGTTCAGGACTCTTCAAGAAAGCCAGTGAGCTTTGTACACTTTGTGGGGTAGAAATCGCCATGATAGTATTCTCTCCAGCTAACAAAGCTTTCTCTTTTGGCCACCCAGGAGTTGAATCCATAATCGACCGTTACCTAGTAACCTTAGCTCGAAAATCGTCCCATCATAATGTTGTCGCGGCGGCCTCGTCGTCATCTTCATCGTCAACATCAATAATCACTACTAGTGTTCATCATCATCGGAATTCTTCTAACATTATTTGTAATCTTAATATGCAGTTAACACAGGTTGTTAACCAGTTGGAGATAGAGAAGAAGCGAGGCGAAGAACTCGATCGTACGAGGAAAGTGAGGCAGAGGGAGTTCTGGTGGGAATGTCCAATTGATGAGTTTGGTTCTGTTGATCAGTTACAGCAACTGAGGATTGCAATGGAGGAACTCAAAAAAGATGTTTTACGGCAAAAGAGTTTTGCTTCGTCTTGTTCATCACAGATTAATAATAATAATATTGTTGGGGAAGATTATTATGGATCGTTTGGACGTTACGATGATGTCTTTTACAGCAAATTGTTCTTAGGTAGTGGTGCTCAGAATGATATTAATGTTGCTGCTAATAATTCGTCCAGCGTTGTTACTGATTATCATCATGCCTTTAATAACCTTGTTTACCAAAACCAGGATAAGGGAATGTTTAAGCTTACCTCTCAGTTTTGA 816 0.3946 MAMMNNKKGSSGRQKIPIEKIPKKSNLQVTFSKRRSGLFKKASELCTLCGVEIAMIVFSPANKAFSFGHPGVESIIDRYLVTLARKSSHHNVVAAASSSSSSSTSIITTSVHHHRNSSNIICNLNMQLTQVVNQLEIEKKRGEELDRTRKVRQREFWWECPIDEFGSVDQLQQLRIAMEELKKDVLRQKSFASSCSSQINNNNIVGEDYYGSFGRYDDVFYSKLFLGSGAQNDINVAANNSSSVVTDYHHAFNNLVYQNQDKGMFKLTSQF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0399 271 Gene3D - 113 205 - -
Alju04g0399 271 Coils Coil 125 145 - -
Alju04g0399 271 Coils Coil 168 188 - -
Alju04g0399 271 Gene3D - 23 97 IPR036879 GO:0003677|GO:0046983
Alju04g0399 271 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Alju04g0399 271 PANTHER MADS BOX PROTEIN 13 189 - -
Alju04g0399 271 FunFam Agamous-like MADS-box protein AGL62 23 89 - -
Alju04g0399 271 SUPERFAMILY SRF-like 12 86 IPR036879 GO:0003677|GO:0046983
Alju04g0399 271 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Alju04g0399 271 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Alju04g0399 271 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Alju04g0399 271 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Alju04g0399 271 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
Alju04g0399 271 CDD MADS_MEF2_like 12 80 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0399 Alju-ChrAlju04 3479195 3480010 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0399 10 186 Type I MADS-box Gene Family AT2G24840 50.000 8.15e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju04g0399 SRF-TF 6.5e-24 No_clan