Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g0398 ATGTCGACTTCACGAAGGAGCAAGGGTCGCCAGAAGATTGAGATGAAGAAGATGACCAGCGAGAGCAACCTTCAAGTGACATTCTCGAAGCGTCGAACCGGGCTTTTCAAGAAAGCCAGTGAGCTTTGTACTCTTTGTGGCGCTGAGGTGGCTCTCATCGTCTTCTCTCCCGGCGAGAAGGTCTTCTCCTTCGGCCACCCCAGCGTCGACACCGTGGTGGACCGCTACCTCACTAGGGCCCCGCCGCCACAGACCATCGGCACCATGCAGCTCATGGAGGCTCACCGCAACGCCAACGTTCGTGACCTCATCACCCAGTTCAGTCAAGTCTCTGCTCAGCTCGACGCCGAGAAGAAGCGCGCTGATGAATTGAATCATATGCGAAAGGCCACCCAAGGTCAGTGCTGGTGGGCAGCTCCGATTGATGAGATGACAAGGACACAGCTTGAGCAGTTCAAGGCGGCGTTGGAGGAGCTGAAGAGGAGTGTGACGAGACTGGCTGATAGGATGGTGCTGATACAGAGTGCAGGTAGCTCATCAAATCAGTTTTTGGCCGGAGCTTCGTCTTCAAATGTGGTGGCTCCGCCGCCGCAGCCTCCACTGCCTAATCCTCAGATGTTTCAGCCGCCGCCACCGGTGGTGGATCAAAATCCTGCTGAGTTTGATGGCGGCATAGTACCGCCCCCGCCACTCCATGGATTTGTTGGATCACCTCCAGGGTTTTACTGA 729 0.561 MSTSRRSKGRQKIEMKKMTSESNLQVTFSKRRTGLFKKASELCTLCGAEVALIVFSPGEKVFSFGHPSVDTVVDRYLTRAPPPQTIGTMQLMEAHRNANVRDLITQFSQVSAQLDAEKKRADELNHMRKATQGQCWWAAPIDEMTRTQLEQFKAALEELKRSVTRLADRMVLIQSAGSSSNQFLAGASSSNVVAPPPQPPLPNPQMFQPPPPVVDQNPAEFDGGIVPPPPLHGFVGSPPGFY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g0398 242 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Alju04g0398 242 Coils Coil 149 169 - -
Alju04g0398 242 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Alju04g0398 242 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Alju04g0398 242 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Alju04g0398 242 MobiDBLite consensus disorder prediction 193 216 - -
Alju04g0398 242 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Alju04g0398 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Alju04g0398 242 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Alju04g0398 242 SUPERFAMILY SRF-like 9 96 IPR036879 GO:0003677|GO:0046983
Alju04g0398 242 PANTHER MADS BOX PROTEIN 10 166 - -
Alju04g0398 242 Gene3D - 21 87 IPR036879 GO:0003677|GO:0046983
Alju04g0398 242 MobiDBLite consensus disorder prediction 187 242 - -
Alju04g0398 242 Gene3D - 88 190 - -
Alju04g0398 242 FunFam Agamous-like MADS-box protein AGL62 20 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g0398 Alju-ChrAlju04 3472701 3473949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g0398 5 195 Type I MADS-box Gene Family AT5G60440 54.315 2.03e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju04g0398 SRF-TF 3e-24 No_clan